View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7698_low_4 (Length: 449)
Name: NF7698_low_4
Description: NF7698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7698_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 48844734 - 48845158
Alignment:
| Q |
17 |
actacttatggatggcatccttattcttcattatatagattgatccaatctacaactaacacatgatatctatgatcgggtctcataatataaatatgat |
116 |
Q |
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|||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48844734 |
actactcatagatggcatccttattcttcattataaagattgatccaatctacaactaacacatgatatctatgatcgggtctcataatataaatatgat |
48844833 |
T |
|
| Q |
117 |
ttttgtttctttaaatttgttccaatcataacgacctttctttaccaaagcctattcttcaagcttgtgagaactaaaaagaacaataaaaataacaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48844834 |
ttttgtttctttaaatttgttccaatcataacgacctttctttaccaaagcctattcttcaagcttgtgagaactaaaaagaacaataaaaataacaaat |
48844933 |
T |
|
| Q |
217 |
gaaataagcacttctattttacatcaagttaaagatatattcaattttttctatacactttatttgaatgatgtaagattttttcatgaatgtaagagaa |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48844934 |
gaaataaacacttctattttacatcaagttaaagatatattcaattttttctatacactttatttgaatgctgtaagattttttcatgaatgtaagagaa |
48845033 |
T |
|
| Q |
317 |
gtattaaatatgaagaatagggattcatcctactttgagaaattggannnnnnnnaggtaagcaaactcgtatcattcccataagaataaaattatgaac |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48845034 |
gtattaaatatgaagaatagggattcatcctactttgagaaactggattttttttaggtaagcaaactcgtatcattcccataagaataaaattatgaac |
48845133 |
T |
|
| Q |
417 |
aaataatccacattacggttcattt |
441 |
Q |
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||| ||||||||||||||||||||| |
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| T |
48845134 |
aaaaaatccacattacggttcattt |
48845158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Complemental strand, 7018111 - 7017685
Alignment:
| Q |
17 |
actacttatggatggcatccttattcttcattatatagattgatccaatctacaactaacacatgatatctatgatcgggtctc--ataatataaatatg |
114 |
Q |
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|||||| || |||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
7018111 |
actactcatagatggcatccttgttcttcattagaaagattgatccaatctacaactaacacatgatatctatgatcgggtctctcataatataaatatg |
7018012 |
T |
|
| Q |
115 |
atttttgtttctttaaatttgttccaatcataacgacctttctttaccaaagcctattcttcaagcttgtgagaactaaaaagaacaataaaaataacaa |
214 |
Q |
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||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7018011 |
atttttgtttctttaaatttgtttcaatcgtaatgacctttctttaccaaagcctattcttcaagcttgtgagaactaaaaagaacaacaaaaataacaa |
7017912 |
T |
|
| Q |
215 |
atgaaataagcacttctattttacatcaagttaaagatatattcaattttttctatacactttatttgaatgatgtaagattttttcatgaatgtaagag |
314 |
Q |
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| T |
7017911 |
atgaaataaacacttctattttacatcaagttaaagatatattcaattttttctatacactttatttgaatgatgtaagattttttcatgaatgtaagag |
7017812 |
T |
|
| Q |
315 |
aagtattaaatatgaagaatagggattcatcctactttgagaaattggannnnnnnnaggtaagcaaactcgtatcattcccataagaataaaattatga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7017811 |
aagtattaaatatgaagaatagggattcatcctactttgagaaactggattttttttaggtaagcaaactcgtatcattcccataagaataaaattatga |
7017712 |
T |
|
| Q |
415 |
acaaataatccacattacggttcattt |
441 |
Q |
| |
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|||||||||||||||||| |||||||| |
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| T |
7017711 |
acaaataatccacattacagttcattt |
7017685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 361
Target Start/End: Original strand, 40979237 - 40979363
Alignment:
| Q |
239 |
atcaagttaaagatatattcaattttttctatacactttatttgaatgatgtaagattttttcatgaatgtaagagaagtattaaatat----gaagaat |
334 |
Q |
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|||||||| || ||||||||||||| ||||||| ||| ||| |||||| | |||||| | ||||||||||||||||||||||| ||||| |||||| |
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| T |
40979237 |
atcaagtttaaaatatattcaatttcttctatagactctatctgaatgctctaagatgtgttcatgaatgtaagagaagtattgaatataaagtaagaat |
40979336 |
T |
|
| Q |
335 |
agggattcatcctactttgagaaattg |
361 |
Q |
| |
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|| |||| || |||||| ||||||||| |
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| T |
40979337 |
agagatttattctacttggagaaattg |
40979363 |
T |
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