View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7698_low_6 (Length: 418)
Name: NF7698_low_6
Description: NF7698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7698_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 9857148 - 9857553
Alignment:
| Q |
1 |
tcttcgcatcccggtgataagtacttcaggatagagtttgattacnnnnnnntatgggttcagacagatacaaatcatcaatctttagaaaacattgaac |
100 |
Q |
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| T |
9857148 |
tcttcgcatcccggtgataagtacttcaggatagagtttgattacaaaaaaatatgggttcagacagatacaaatcatcaatctttagaaaacattgaac |
9857247 |
T |
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| Q |
101 |
gttacacccttcgtaaagtttcagcagataaattgatggaagaaactacaatttcatcgtggctttctcacataaaattccctaaagaatattttgcgtt |
200 |
Q |
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| T |
9857248 |
gttacacccttcgtaaagtttcagcagataaattgatggaagaaactacaattccatcgtggctttctcacataaaattccctaaagaatattttgcctt |
9857347 |
T |
|
| Q |
201 |
ggtggtagaagaaatcttgcgatgtgctcgcgatatggttaatgg---gacttataataacctaaagtttctttgtattcgagttgatttttctcttaca |
297 |
Q |
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| T |
9857348 |
gatggtagaagaaatcttgcgatgtgctcgcgatatggttaatgggacgacttataataacctaaagtttctttgtattcgagtcgatttttctcttaca |
9857447 |
T |
|
| Q |
298 |
attcctttggaagacgatagctgtgatgaaggtgattacggagatgaagagaacctttgtttggaagaggatgaagaggaaattgaggttggggaggaag |
397 |
Q |
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| T |
9857448 |
attcctttggaagacgatagctgtgatgaaggtgattacggagatgaagagaacctttgtttggaagaggataaagaggaaattgaggttggggaggaag |
9857547 |
T |
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| Q |
398 |
ataatg |
403 |
Q |
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|||||| |
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| T |
9857548 |
ataatg |
9857553 |
T |
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