View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7698_low_8 (Length: 362)
Name: NF7698_low_8
Description: NF7698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7698_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 6858588 - 6858801
Alignment:
| Q |
1 |
atccgcgaaaatcgcgaaagaatgggaaaattgggtattctcgacatttcactttccctcaagctcaaacctaacccaccttcacgcagaaccccttcta |
100 |
Q |
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| T |
6858588 |
atccgcgaaaatcacgaaagaatgggaaaattgggtattctcgacatttcactttccctcaagctcaaacctaacccaccttcacgcagaaccccttcta |
6858687 |
T |
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| Q |
101 |
acaaccctaaatccccaatttctctcaaaccttctggcccatctcgccgatcttccaggttcttccatttatgccctaaaaattcaatctttcatatgtt |
200 |
Q |
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| T |
6858688 |
acaaccctaaatccccaatttctctcaacccttctggcccatctcgccgatcttccaggttcttccatttttgccctaaaaattcaatctttcatatgtt |
6858787 |
T |
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| Q |
201 |
tagctaaaacccaa |
214 |
Q |
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|||||||||||||| |
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| T |
6858788 |
tagctaaaacccaa |
6858801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 6887650 - 6887861
Alignment:
| Q |
1 |
atccgcgaaaatcgcgaaagaatgggaaaattgggtattctcgacatttcactttccctcaagctcaaacctaaccc---accttcacgcagaacccctt |
97 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6887650 |
atccgtgaaaatcgtgaaagaatgggaaaattgggtattctcgacatttcactttccctcaagctcaaacctaaccccccaccttcacgcagaacccctt |
6887749 |
T |
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| Q |
98 |
ctaacaaccctaaatccccaatttctctcaaaccttctggcccatctcgccgatcttccaggttcttccatttatgccctaaaaattcaatctttcatat |
197 |
Q |
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| T |
6887750 |
ctaacaaccctaaatccccaatttctcttaacccttctggcccatctcgccgatcttccaggttcttacatttttgacctaaaaatttaatctttcatat |
6887849 |
T |
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| Q |
198 |
gtttagctaaaa |
209 |
Q |
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| T |
6887850 |
gtttagctaaaa |
6887861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 6858867 - 6858935
Alignment:
| Q |
280 |
aggttgcagaatgttgctccaattagttactctgaagcgcgagtgaagggagaaaaacgtgagaaaagt |
348 |
Q |
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| T |
6858867 |
aggttgcagaatgttgctccaattagttactctgaagcgcaagtgaagggagaaaagcgtgagaaaagt |
6858935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 280 - 348
Target Start/End: Original strand, 6888398 - 6888466
Alignment:
| Q |
280 |
aggttgcagaatgttgctccaattagttactctgaagcgcgagtgaagggagaaaaacgtgagaaaagt |
348 |
Q |
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| T |
6888398 |
aggttacagaatgttgctccgattagttactctgaagtgccagtgaagggagaaaagcttgagaaaagt |
6888466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6849197 - 6849258
Alignment:
| Q |
1 |
atccgcgaaaatcgcgaaagaatgggaaaattgggtattctcgacatttcactttccctcaa |
62 |
Q |
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||||| |||||||| ||||||||||||||||||||| || |||||||||| || |||||||| |
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| T |
6849197 |
atccgagaaaatcgtgaaagaatgggaaaattgggtcttttcgacatttcgctctccctcaa |
6849258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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