View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_high_27 (Length: 201)
Name: NF7699_high_27
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_high_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 40568988 - 40568848
Alignment:
| Q |
56 |
taattgcattcatcaattttaatattgaattcgaaattgacaatgttttcaatattgaattacaatcacaattcatgaactaaataagactacatacatt |
155 |
Q |
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| T |
40568988 |
taattgcattcatcaattttaatattgaattcgaaattgacaatgttttcaatattgaattacaatcacaattcttgaactaaataagactacatacatt |
40568889 |
T |
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| Q |
156 |
atgaagaggtgttgtgtttccacgaccatcttaacactctcttcat |
201 |
Q |
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| T |
40568888 |
atgaagagg-----tgtttccacgaccatcttaacactctcctcat |
40568848 |
T |
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