View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7699_high_4 (Length: 735)

Name: NF7699_high_4
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7699_high_4
NF7699_high_4
[»] chr8 (1 HSPs)
chr8 (1-720)||(43450099-43450820)


Alignment Details
Target: chr8 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 1 - 720
Target Start/End: Complemental strand, 43450820 - 43450099
Alignment:
Q  1 caaatacaattttgttttctagctattataggaaacaaagtgtcaccaaacaaaaatcatccgttggtaccggagaaaatcacggaccatgactatatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43450820 caaatacaattttgttttctagctattataggaaacaaagtgtcaccaaacaaaagtcatccgttggtaccggagaaaatcacggaccatgactatatgc 43450721  T
Q  101 acaaacaactaacagcaaattttgagcagtccaatttaaatttcaggaggccttaattaaaatcaaagaggccaataaaatttccaaaattgacctaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43450720 acaaacaactaacagcaaattttgagcagtccaatttaaatttcaggaggccttaattaaaatcaaagaggccaataaaatttccaaaattgacctaatt 43450621  T
Q  201 cttgttaacttcattctagaaaat--aacaagaaaccaaacaaatccttcacaacactgagttgaagtacaagaaatcaatctttaggttcacttttatg 298  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43450620 cttgttaacttcattctagaaaatttaacaagaaaccaaacaaatccttcacaacactgagttgaagcacaagaaatcaatctttaggttcacttttatg 43450521  T
Q  299 ttaaaatcccagttgataaaaaattgaacgaacccaatgaaattaacacaacaaacataaacatttgtaagttgaattgaagaaaagtataaattcgtaa 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43450520 ttaaaatcccagttgataaaaaattgaacgaacccaatgaaattaacacaacaaacataaacatttgtaagttgaattgaagaaaagtataaattcgtaa 43450421  T
Q  399 acagataacatcaaggacaacattacattataccgtccgttctccaactgaggcattttcatttcctcctttctatgcaatccaccaccgtcgttgctgc 498  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43450420 acaaataacatcaaggacaacattacattataccgtccgttctccaactgaggcattttcatttcctcctttctatgcaatccaccacggtcgttgctgc 43450321  T
Q  499 cacttcctgcagcgttcttcaagatcaacaacggtggactaattgtcgaatcttcatctttattcaccaaaacctctttaaaatacacagcaagaaccct 598  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43450320 cacttcctgcagcgttcttcaagatcaacaacggtggactaatcgtcgaatcttcatctttattcaccaaaacctctttaaaatacacagcaagaaccct 43450221  T
Q  599 gcaattctcatccaaaaccttttcgtactccttctccaactccttcagctttaacgcttgatcactgctcacactcgataacaactttgcataaggcata 698  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43450220 gcaattctcatccaaaacctcttcgtactccttctccaactccttcagctttaacgcttgatcactgctcacactcgataacaactttgcataaggcata 43450121  T
Q  699 aacaaatcgttggaaacagagt 720  Q
    ||||||||||||||||||||||    
T  43450120 aacaaatcgttggaaacagagt 43450099  T

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