View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7699_low_10 (Length: 565)

Name: NF7699_low_10
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7699_low_10
NF7699_low_10
[»] chr1 (25 HSPs)
chr1 (176-508)||(16122477-16122810)
chr1 (294-483)||(17116056-17116245)
chr1 (294-504)||(4973186-4973398)
chr1 (9-70)||(16122310-16122371)
chr1 (281-449)||(50726458-50726626)
chr1 (301-483)||(40693745-40693927)
chr1 (352-472)||(10443401-10443520)
chr1 (340-484)||(31513742-31513886)
chr1 (298-507)||(4966492-4966704)
chr1 (342-484)||(14286875-14287017)
chr1 (526-565)||(16124240-16124279)
chr1 (531-565)||(37070245-37070279)
chr1 (291-508)||(31183253-31183471)
chr1 (395-471)||(40032556-40032632)
chr1 (293-484)||(11767770-11767961)
chr1 (531-565)||(3282184-3282218)
chr1 (286-332)||(22791357-22791403)
chr1 (531-565)||(28220671-28220705)
chr1 (531-565)||(28223866-28223900)
chr1 (352-438)||(50709423-50709509)
chr1 (426-474)||(270874-270922)
chr1 (291-327)||(17936471-17936507)
chr1 (529-565)||(28220576-28220611)
chr1 (529-565)||(30476798-30476833)
chr1 (454-490)||(50727213-50727249)
[»] chr6 (16 HSPs)
chr6 (337-508)||(8485794-8485962)
chr6 (293-484)||(2988252-2988443)
chr6 (281-474)||(2032491-2032684)
chr6 (340-485)||(688203-688348)
chr6 (395-507)||(12312128-12312236)
chr6 (404-508)||(32340378-32340479)
chr6 (281-328)||(10229251-10229298)
chr6 (531-565)||(5017080-5017114)
chr6 (531-565)||(5571850-5571884)
chr6 (531-565)||(9183454-9183488)
chr6 (531-565)||(24435558-24435592)
chr6 (531-565)||(31086057-31086091)
chr6 (453-508)||(6724579-6724637)
chr6 (352-440)||(17533559-17533647)
chr6 (537-565)||(22964175-22964203)
chr6 (537-565)||(23824190-23824218)
[»] chr7 (31 HSPs)
chr7 (342-490)||(34471617-34471765)
chr7 (292-378)||(25311291-25311377)
chr7 (387-484)||(2185862-2185959)
chr7 (290-484)||(48152834-48153029)
chr7 (336-484)||(3751620-3751768)
chr7 (336-484)||(48138349-48138497)
chr7 (292-435)||(9229518-9229661)
chr7 (340-508)||(47843869-47844035)
chr7 (291-471)||(42040595-42040775)
chr7 (352-484)||(43495878-43496009)
chr7 (352-484)||(45648348-45648480)
chr7 (394-488)||(40836297-40836390)
chr7 (395-484)||(22543484-22543573)
chr7 (395-484)||(45492067-45492156)
chr7 (340-435)||(45804788-45804884)
chr7 (352-435)||(24699709-24699792)
chr7 (531-565)||(2647283-2647317)
chr7 (531-565)||(4538995-4539029)
chr7 (531-565)||(14070278-14070312)
chr7 (531-565)||(14380306-14380340)
chr7 (531-565)||(23554729-23554763)
chr7 (531-565)||(43863951-43863985)
chr7 (531-565)||(47674387-47674421)
chr7 (531-565)||(47676580-47676614)
chr7 (531-565)||(49092169-49092203)
chr7 (532-565)||(33332037-33332070)
chr7 (529-565)||(2761652-2761687)
chr7 (291-355)||(5474841-5474905)
chr7 (529-565)||(14070183-14070218)
chr7 (529-565)||(14380211-14380246)
chr7 (404-440)||(24911733-24911769)
[»] chr2 (24 HSPs)
chr2 (293-484)||(38221738-38221929)
chr2 (287-484)||(26352394-26352591)
chr2 (294-490)||(40498389-40498585)
chr2 (394-490)||(17328615-17328711)
chr2 (301-474)||(36467024-36467196)
chr2 (319-483)||(11562848-11563010)
chr2 (281-429)||(42794921-42795069)
chr2 (531-565)||(8389733-8389767)
chr2 (322-484)||(30382915-30383077)
chr2 (531-565)||(33528209-33528243)
chr2 (531-565)||(39483354-39483388)
chr2 (532-565)||(10706839-10706872)
chr2 (532-565)||(23078058-23078091)
chr2 (292-328)||(41323719-41323755)
chr2 (531-565)||(2837288-2837322)
chr2 (535-565)||(14698599-14698629)
chr2 (281-435)||(14749364-14749518)
chr2 (531-565)||(20522699-20522733)
chr2 (531-565)||(29867569-29867603)
chr2 (531-565)||(34389328-34389362)
chr2 (286-356)||(35298246-35298316)
chr2 (421-483)||(35298370-35298432)
chr2 (533-565)||(17865655-17865687)
chr2 (529-565)||(29867651-29867687)
[»] chr5 (18 HSPs)
chr5 (281-508)||(7056899-7057121)
chr5 (281-484)||(29231202-29231405)
chr5 (353-508)||(31114099-31114252)
chr5 (289-364)||(8229134-8229209)
chr5 (340-508)||(3387135-3387300)
chr5 (531-565)||(11916557-11916591)
chr5 (340-484)||(19100157-19100301)
chr5 (290-472)||(27925149-27925332)
chr5 (531-565)||(213034-213068)
chr5 (454-488)||(8229269-8229303)
chr5 (531-565)||(14520707-14520741)
chr5 (531-565)||(42428862-42428896)
chr5 (395-484)||(13407384-13407473)
chr5 (529-565)||(533552-533587)
chr5 (454-504)||(12848547-12848594)
chr5 (395-447)||(14202899-14202951)
chr5 (536-564)||(16651067-16651095)
chr5 (342-474)||(34764724-34764856)
[»] chr8 (21 HSPs)
chr8 (290-474)||(11789508-11789692)
chr8 (289-484)||(11755792-11755987)
chr8 (374-484)||(18320613-18320723)
chr8 (281-472)||(9409727-9409918)
chr8 (280-372)||(24728766-24728858)
chr8 (342-508)||(25429878-25430042)
chr8 (340-484)||(17749023-17749167)
chr8 (352-509)||(24888870-24889025)
chr8 (531-565)||(40221236-40221270)
chr8 (404-484)||(18928685-18928765)
chr8 (531-565)||(4733515-4733549)
chr8 (531-565)||(5702065-5702099)
chr8 (531-565)||(12703083-12703117)
chr8 (352-478)||(13003232-13003357)
chr8 (318-435)||(14179887-14180002)
chr8 (531-565)||(15212476-15212510)
chr8 (531-565)||(19175318-19175352)
chr8 (531-565)||(22976006-22976040)
chr8 (536-565)||(11383483-11383512)
chr8 (529-565)||(8910976-8911012)
chr8 (529-565)||(43036206-43036241)
[»] chr4 (32 HSPs)
chr4 (291-484)||(2295180-2295373)
chr4 (342-484)||(47923071-47923213)
chr4 (294-446)||(4214094-4214241)
chr4 (421-484)||(7208626-7208689)
chr4 (531-565)||(3778026-3778060)
chr4 (531-565)||(5268785-5268819)
chr4 (531-565)||(16628457-16628491)
chr4 (531-565)||(36314816-36314850)
chr4 (531-565)||(36329025-36329059)
chr4 (531-565)||(40630456-40630490)
chr4 (531-564)||(10047843-10047876)
chr4 (395-484)||(19721831-19721920)
chr4 (407-472)||(35823723-35823788)
chr4 (292-372)||(38948698-38948778)
chr4 (281-345)||(40216791-40216855)
chr4 (294-345)||(53586219-53586270)
chr4 (405-479)||(1052289-1052363)
chr4 (531-565)||(5396276-5396310)
chr4 (531-565)||(8689082-8689116)
chr4 (341-484)||(24917391-24917535)
chr4 (531-565)||(26363737-26363771)
chr4 (531-565)||(27417613-27417647)
chr4 (458-508)||(27675411-27675460)
chr4 (531-565)||(34570858-34570892)
chr4 (531-565)||(52095805-52095839)
chr4 (531-565)||(54867656-54867690)
chr4 (531-565)||(54882512-54882546)
chr4 (532-565)||(16622879-16622912)
chr4 (336-429)||(45773863-45773956)
chr4 (360-440)||(6255272-6255352)
chr4 (352-484)||(15476870-15477002)
chr4 (529-565)||(34570764-34570799)
[»] scaffold0565 (1 HSPs)
scaffold0565 (293-484)||(7710-7901)
[»] chr3 (28 HSPs)
chr3 (280-484)||(27164151-27164355)
chr3 (319-508)||(24611563-24611751)
chr3 (422-508)||(39615141-39615224)
chr3 (396-487)||(2118611-2118702)
chr3 (531-565)||(8370064-8370098)
chr3 (531-565)||(16264826-16264860)
chr3 (531-565)||(27027184-27027218)
chr3 (531-565)||(40592357-40592391)
chr3 (531-565)||(40734186-40734220)
chr3 (531-565)||(40735117-40735151)
chr3 (395-484)||(20369370-20369459)
chr3 (301-508)||(31489628-31489823)
chr3 (352-474)||(7629329-7629451)
chr3 (531-565)||(7764141-7764175)
chr3 (281-435)||(12176659-12176813)
chr3 (531-565)||(21711679-21711713)
chr3 (531-565)||(29812753-29812787)
chr3 (531-565)||(36029571-36029605)
chr3 (531-565)||(39032130-39032164)
chr3 (531-565)||(48438693-48438727)
chr3 (536-565)||(1735884-1735913)
chr3 (536-565)||(6096262-6096291)
chr3 (291-328)||(17064096-17064133)
chr3 (281-434)||(36172112-36172264)
chr3 (533-565)||(27038519-27038551)
chr3 (529-565)||(29810651-29810686)
chr3 (352-472)||(43471643-43471763)
chr3 (529-565)||(46985892-46985928)
[»] scaffold0495 (1 HSPs)
scaffold0495 (281-328)||(5969-6016)
[»] scaffold0176 (1 HSPs)
scaffold0176 (531-565)||(17708-17742)
[»] scaffold0006 (1 HSPs)
scaffold0006 (531-565)||(2971-3005)
[»] scaffold0066 (1 HSPs)
scaffold0066 (536-565)||(20859-20888)
[»] scaffold0036 (1 HSPs)
scaffold0036 (536-565)||(86066-86095)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 176 - 508
Target Start/End: Original strand, 16122477 - 16122810
Alignment:
Q  176 ctggagacagtgttgccacgttatgagga-gtgaaacgacacttctgtgtcgcgtttaaggaatggctttggtggtaaggctctaatgtctttgggaata 274  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16122477 ctggagacagtgttgccacgttatgaggacgtgaaacgacacttctgtgtcgcgtttaaggaatggctttggtggtaaggctctaatgtctttgggaata 16122576  T
Q  275 ctctccctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctc 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  16122577 ctctccctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatccat 16122676  T
Q  375 gaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 474  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16122677 aaagtgtctgacttaaataatttaatttctaaaaaatattttaccggatacttataagatatttcatagatacatcataatacttataagatacttcaca 16122776  T
Q  475 tatacgtatcataggacaaaaaatgaagggtaaa 508  Q
    ||||||||||||||||||||||||||||||||||    
T  16122777 tatacgtatcataggacaaaaaatgaagggtaaa 16122810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 294 - 483
Target Start/End: Original strand, 17116056 - 17116245
Alignment:
Q  294 atactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaata 393  Q
    ||||||||||||||| |||||| |||| |||||||||||   ||| ||||||||||| ||||||| ||| ||||||||| |||||| || || |||| ||    
T  17116056 atactccaaaacggagacgtacacgtaccagatacgtatcggataccgatacttcacggatactcgcgggtacgtatccacgaagtatcggaattaatta 17116155  T
Q  394 atttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtat 483  Q
     |||||||| ||  |||||||||| | ||||||||   |||| | || |||||||| | ||||||| |||||||||||||||| ||||||    
T  17116156 ttttaatttttattaaatattttatcggatacttaggtgatactccacagatacacaagaatacttctaagatacttcacatacacgtat 17116245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 294 - 504
Target Start/End: Complemental strand, 4973398 - 4973186
Alignment:
Q  294 atactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacag--atactctcggatacgtatcctcgaagtgtctgacttaaa 391  Q
    ||||||||||||||| |||||||||||||| |||||||||  ||| |||||  | |||   |||||| |||||||||| || |||| | |  || ||||     
T  4973398 atactccaaaacggagacgtacccgtatcaaatacgtattggataccgatatattacactaatactcgcggatacgtacccacgaaatatgagaattaat 4973299  T
Q  392 taatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatcataggac 491  Q
    || || |||||  ||||||||||||| |||||||||||| |||| | || | |||||| |  ||||||||||||||||| ||||||| ||||| ||| |     
T  4973298 tatttaaattttaaaaaaatattttatcagatacttatatgatactccacaaatacacaaagatacttataagatactttacatatatgtatcctagaaa 4973199  T
Q  492 aaaaaatgaaggg 504  Q
    |||||||||||||    
T  4973198 aaaaaatgaaggg 4973186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 16122310 - 16122371
Alignment:
Q  9 agtgagaagaacacgaactgggtctttggccatttttgatgaaatgaaaggaatcgaaaatg 70  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16122310 agtgacaagaacacgaactgggtctttggccatttttgatgaaatgaaaggaatcgaaaatg 16122371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 449
Target Start/End: Original strand, 50726458 - 50726626
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 380  Q
    |||| ||||||||||||| ||| || || ||||||||||||| ||||||||| | ||| ||||| | ||| |||| ||  | |||||||||| ||||||     
T  50726458 ctatgaagtccggatacttcaagacagagacgtacccgtatcggatacgtatcatataccgatattccacggatattcgtgaatacgtatccacgaagta 50726557  T
Q  381 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacac 449  Q
    || || |||| || |||||||| ||| |||||||||  | |||||||||  |||| |||| ||||||||    
T  50726558 tcggaattaattattttaatttttaataaatattttttcggatacttatgtgatacttcacagatacac 50726626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 483
Target Start/End: Original strand, 40693745 - 40693927
Alignment:
Q  301 aaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaat 400  Q
    ||||| || ||||||| ||| | |||||||||   ||| ||||||| ||| ||||||| ||||||||||||| |||||| |  || |||| || ||||||    
T  40693745 aaaacagagacgtacctgtaccggatacgtatcggataccgatactccacggatactcgcggatacgtatccacgaagtattggaattaattattttaat 40693844  T
Q  401 ttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtat 483  Q
    || ||| |||||||||| | ||||| |||  |||| | ||  ||||||| | ||||||| |||||||||||||| | ||||||    
T  40693845 ttttaataaatattttatcggatacatatgtgatactccacggatacacaagaatacttctaagatacttcacagaaacgtat 40693927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 352 - 472
Target Start/End: Original strand, 10443401 - 10443520
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 451  Q
    ||||||| |||||||||| || | |||| || || |||| || |||||||| |||||||||||||| |  ||||||||| |||||||||||||||||| |    
T  10443401 gatactcgcggatacgtacccacaaagtatcggaattaattattttaattt-taaaaaatattttatctaatacttataggatatttcatagatacacga 10443499  T
Q  452 taatacttataagatacttca 472  Q
      ||||||| | |||||||||    
T  10443500 ggatacttacatgatacttca 10443520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 484
Target Start/End: Complemental strand, 31513886 - 31513742
Alignment:
Q  340 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 439  Q
    |||||||| || ||||||| ||||||| ||||| |||| | || || |||| || |||||||| ||| |||||||||| | |||||||||  |||| | |    
T  31513886 cgatactttacggatactcgcggatacatatccacgaactatcggaattaattattttaatttttaataaatattttatcggatacttatgtgatactcc 31513787  T
Q  440 atagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    | |||||||| |  |||||| |||||||||||||| | |||||||    
T  31513786 acagatacacaaggatacttctaagatacttcacagacacgtatc 31513742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 507
Target Start/End: Original strand, 4966492 - 4966704
Alignment:
Q  298 tccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcaca--gatactctcggatacgtatcctcgaagtgtctgacttaaataat 395  Q
    ||||||||||| || ||||||||||| |||||||||  |||||||||  | |||  |||| || |||||||||| || |||||| |  || |||| || |    
T  4966492 tccaaaacggagacttacccgtatcaaatacgtattggatatcgatatattacacggatattcgcggatacgtacccacgaagtatgagaattaattatt 4966591  T
Q  396 ttaatttctaaaaaatat--tttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatcataggacaa 493  Q
    | |||||  |||||| ||  |||| | |||||||||| |||| | || | |||||| |  ||||||||||||||||| ||||||| ||||| || || ||    
T  4966592 taaattttaaaaaaaaataatttatcggatacttatatgatactccacaaatacacaaggatacttataagatactttacatatatgtatccta-gaaaa 4966690  T
Q  494 aaaatgaagggtaa 507  Q
    ||||||||||||||    
T  4966691 aaaatgaagggtaa 4966704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 342 - 484
Target Start/End: Original strand, 14286875 - 14287017
Alignment:
Q  342 atacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcat 441  Q
    ||||| ||| ||||||| ||||||| ||  |  ||||| || || |||| || ||||||||  |||| |||| ||| | |||||||||| |||| | |||    
T  14286875 atactccacggatactcgcggatacatactcatgaagtatcggaattaattattttaatttaaaaaatatatattatcggatacttatatgatactccat 14286974  T
Q  442 agatacaccataatacttataagatacttcacatatacgtatc 484  Q
    |||||||| || |||||||||||||||||| |||||| |||||    
T  14286975 agatacacaatgatacttataagatacttcgcatatatgtatc 14287017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 526 - 565
Target Start/End: Original strand, 16124240 - 16124279
Alignment:
Q  526 atcaacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  16124240 atcaacgtgtcacgattttcggaaaacgtgacacgatttt 16124279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 37070279 - 37070245
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  37070279 cgtgtcacgattttgggaaaacgtgacacgatttt 37070245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 508
Target Start/End: Original strand, 31183253 - 31183471
Alignment:
Q  291 cggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatac-gtatcctcgaagtgtctgactta 389  Q
    |||||||||||||| ||   ||||||||| ||||||||||||   ||| ||||||| | | |||||||  |||||| |||||| || ||| || || |||    
T  31183253 cggatactccaaaatggtgccgtacccgtgtcagatacgtatcgcataccgatactccgcggatactca-ggataccgtatccacggagtatcggaatta 31183351  T
Q  390 aataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacac-cataatacttataagatacttcacatatacgtatcatag 488  Q
      || ||||||||  || | |||||||| ||||||||||||||||| |  | |||||||| ||| |||||||||||||||||   | | ||||||| |||    
T  31183352 tttattttaatttaaaatatatattttatcagatacttataagatactcgacagatacacacat-atacttataagatactttctagagacgtatcctag 31183450  T
Q  489 g-acaaaaaatgaagggtaaa 508  Q
    | | |||||||||||||||||    
T  31183451 gaaaaaaaaatgaagggtaaa 31183471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 40032556 - 40032632
Alignment:
Q  395 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttc 471  Q
    |||||||| |||||||||||||| |||||||||||| |||| | || ||||| || |  |||||| |||||||||||    
T  40032556 tttaatttttaaaaaatattttatcagatacttatatgatactccacagatatacaaggatacttctaagatacttc 40032632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 484
Target Start/End: Complemental strand, 11767961 - 11767770
Alignment:
Q  293 gatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaat 392  Q
    ||||||| |||||||| ||||||||||||  |||||||||   ||| |||||||| || ||||||| |||||||| | || |||||| ||  | |||| |    
T  11767961 gatactctaaaacggagacgtacccgtattggatacgtatcggataccgatactttacggatactcgcggatacgcacccacgaagtatcaaaattaatt 11767862  T
Q  393 aatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    | || ||||  |  |||| | |||| | |||||||||| |||| | || | ||| || |  ||||||||||||||||||| | |||||||||    
T  11767861 atttaaattattttaaaaaaatttaacggatacttatacgatactccacaaatatacaaagatacttataagatacttcagagatacgtatc 11767770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 3282218 - 3282184
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||    
T  3282218 cgtgtcacgattttgagaaaacgtgacacgatttt 3282184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 22791403 - 22791357
Alignment:
Q  286 aagtccggatactccaaaacggaaacgtacccgtatcagatacgtat 332  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| ||||    
T  22791403 aagtccggatactccaaaatggagacgtacccgtatcatatatgtat 22791357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 28220705 - 28220671
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  28220705 cgtgacacgattttgggaaaacgtgacacgatttt 28220671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 28223900 - 28223866
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  28223900 cgtgacacgattttgggaaaacgtgacacgatttt 28223866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 438
Target Start/End: Original strand, 50709423 - 50709509
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatattt 438  Q
    |||| |||||||||||||||| || | | || || |||| || ||||||||  || | |||||||| ||||||||||||||||||||    
T  50709423 gatagtctcggatacgtatccacggactatcggaattaattattttaatttaaaatatatattttatcagatacttataagatattt 50709509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 474
Target Start/End: Original strand, 270874 - 270922
Alignment:
Q  426 ttataagatatttcatagatacaccataatacttataagatacttcaca 474  Q
    |||| ||||| ||||||||||||| | ||||||||||||||| ||||||    
T  270874 ttatcagatacttcatagatacacaagaatacttataagatatttcaca 270922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 17936507 - 17936471
Alignment:
Q  291 cggatactccaaaacggaaacgtacccgtatcagata 327  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  17936507 cggatactccaaaatggagacgtacccgtatcagata 17936471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Complemental strand, 28220611 - 28220576
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||||    
T  28220611 aacgtgtcacgattt-gggaaaacgtgacacgatttt 28220576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Complemental strand, 30476833 - 30476798
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||||    
T  30476833 aacgtgtcacgattt-gggaaaacgtgacacgatttt 30476798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 490
Target Start/End: Original strand, 50727213 - 50727249
Alignment:
Q  454 atacttataagatacttcacatatacgtatcatagga 490  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  50727213 atacttataagatacttcacatagacgtatcttagga 50727249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 337 - 508
Target Start/End: Original strand, 8485794 - 8485962
Alignment:
Q  337 tatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatat 436  Q
    |||||||||||||| ||||||||  |||||||| || |||||| ||||| ||||||| ||||||||  |||||||||||||    ||||||||||||||     
T  8485794 tatcgatacttcacggatactcttagatacgtacccacgaagtatctgaattaaatattttaattttaaaaaaatattttattgaatacttataagatac 8485893  T
Q  437 ttcatagatacaccataatacttataagatacttcacatatacgtatcataggacaaaaaatgaagggtaaa 508  Q
    | ||||||||||| || |||||||||||| |||||||||||||||||| |||   ||||||| |||||||||    
T  8485894 tccatagatacactatgatacttataagacacttcacatatacgtatcctag---aaaaaataaagggtaaa 8485962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 293 - 484
Target Start/End: Complemental strand, 2988443 - 2988252
Alignment:
Q  293 gatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaat 392  Q
    ||||||||||||| || |||||| ||||| |||||||||| | |||  |||||| |||||||| || |||||||| |  | | |||| || || |||| |    
T  2988443 gatactccaaaacagagacgtactcgtattagatacgtatcagatactgatactccacagatagtcacggatacgcacacacaaagtatcagaattaatt 2988344  T
Q  393 aatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    | || ||||| |||||||||||||| | |||||||||| |||| | |  |||||||| || |||||||||||||| |||||| |||||||||    
T  2988343 atttaaatttttaaaaaatattttaacggatacttatacgatactccgcagatacacaatgatacttataagatagttcacaaatacgtatc 2988252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 281 - 474
Target Start/End: Complemental strand, 2032684 - 2032491
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 380  Q
    |||| ||| ||||||||| ||||||||| | |||| |||| |  ||||||||   ||| ||||||| ||| ||||||| ||||||||||||| ||||||     
T  2032684 ctatgaagcccggatactacaaaacggagatgtactcgtaccgaatacgtatcggataccgatactccacggatactcgcggatacgtatccacgaagta 2032585  T
Q  381 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 474  Q
    || || |||| || |||||||| ||| |||||||||| | |||| ||||  |||| | || | |||||| |  |||||| ||||||||||||||    
T  2032584 tcggaattaattattttaatttttaataaatattttatcggatatttatgtgatactccacatatacacaaggatacttctaagatacttcaca 2032491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 485
Target Start/End: Complemental strand, 688348 - 688203
Alignment:
Q  340 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 439  Q
    ||||||| ||| ||||||| ||||||||||||| |||||| || || |||  || |||||||| ||| |||||||||| |||||||||||   ||| |      
T  688348 cgatactccacggatactcgcggatacgtatccacgaagtatcagaattatttattttaatttttaataaatattttatcagatacttatgttatactca 688249  T
Q  440 atagatacaccataatacttataagatacttcacatatacgtatca 485  Q
    |  ||||||| |  |||||| ||||||||||||| |||||||||||    
T  688248 acggatacacaaggatacttctaagatacttcacgtatacgtatca 688203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 395 - 507
Target Start/End: Complemental strand, 12312236 - 12312128
Alignment:
Q  395 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatcataggacaaa 494  Q
    |||||||| ||||||||| |||| |  |||||||||||||| | ||||| ||||| || ||||||||||||||||||| | ||| ||||| |||   |||    
T  12312236 tttaattt-taaaaaataatttatccaatacttataagatactccatagttacacaatgatacttataagatacttcaaagatatgtatcctag---aaa 12312141  T
Q  495 aaatgaagggtaa 507  Q
    |||||||||||||    
T  12312140 aaatgaagggtaa 12312128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 404 - 508
Target Start/End: Complemental strand, 32340479 - 32340378
Alignment:
Q  404 taaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatcataggacaaaaaatgaagg 503  Q
    |||||||||||||| | |||||||||  ||||||||| ||||||| ||  ||| || |||||||||||||||||| ||||| |||   |||| |||||||    
T  32340479 taaaaaatattttatcggatacttatgtgatatttcacagataca-caagataattctaagatacttcacatatatgtatcctag--aaaaagatgaagg 32340383  T
Q  504 gtaaa 508  Q
    |||||    
T  32340382 gtaaa 32340378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 10229251 - 10229298
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatac 328  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  10229251 ctatgaagtctggatacttcaaaacggagacgtacccgtatcagatac 10229298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 5017080 - 5017114
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||    
T  5017080 cgtgtcacgattttgagaaaacgtgacacgatttt 5017114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 5571850 - 5571884
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||    
T  5571850 cgtgtcacgattttgagaaaacgtgacacgatttt 5571884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 9183488 - 9183454
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  9183488 cgtgacacgattttgggaaaacgtgacacgatttt 9183454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 24435558 - 24435592
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||| |||||||||||||||||||||||||||    
T  24435558 cgtgtcatgattttgggaaaacgtgacacgatttt 24435592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 31086057 - 31086091
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||| ||||||||||||||||||    
T  31086057 cgtgtcacgattttggaaaaacgtgacacgatttt 31086091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 508
Target Start/End: Complemental strand, 6724637 - 6724579
Alignment:
Q  453 aatacttataagatacttcacatatacgtatcat---aggacaaaaaatgaagggtaaa 508  Q
    |||||||||||||||||||||||| ||||||| |   |||| |||||||||| ||||||    
T  6724637 aatacttataagatacttcacatagacgtatcctggaaggaaaaaaaatgaatggtaaa 6724579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 440
Target Start/End: Complemental strand, 17533647 - 17533559
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttca 440  Q
    ||||||||| |||||||||||  ||||| || || |||| || ||||||||  || | |||||||| | ||||||||||||||| ||||    
T  17533647 gatactctcagatacgtatccatgaagtatcggaattaattattttaatttaaaatatatattttatcggatacttataagatacttca 17533559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 565
Target Start/End: Complemental strand, 22964203 - 22964175
Alignment:
Q  537 acgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||    
T  22964203 acgattttgggaaaacgtgacacgatttt 22964175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 537 - 565
Target Start/End: Original strand, 23824190 - 23824218
Alignment:
Q  537 acgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||    
T  23824190 acgattttgggaaaacgtgacacgatttt 23824218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 342 - 490
Target Start/End: Original strand, 34471617 - 34471765
Alignment:
Q  342 atacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcat 441  Q
    ||||| ||||||||||| || ||| ||| || |||||| || || |||| || ||||||||  ||||||||||||| | |||||||||| |||| |||||    
T  34471617 atactccacagatactcacgaatatgtacccacgaagtatcagaattaattattttaattttaaaaaaatattttatctgatacttataggatacttcat 34471716  T
Q  442 agatacaccataatacttataagatacttcacatatacgtatcatagga 490  Q
    |||||||| | |||||||||||||||||||||||||||||||| |||||    
T  34471717 agatacacaagaatacttataagatacttcacatatacgtatcctagga 34471765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 25311377 - 25311291
Alignment:
Q  292 ggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaag 378  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||| |||  |||||| |||| |||||| ||||||||||||| |||||    
T  25311377 ggatactccaaaacggagacgtacccgtatcggatacatattagatactgatactccacaaatactcgcggatacgtatccacgaag 25311291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 387 - 484
Target Start/End: Complemental strand, 2185959 - 2185862
Alignment:
Q  387 ttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    |||| ||||||||||| |||||||||| ||| | |||||||||| |||| | |||| |||||| |  ||||||||||||||||||||||||| |||||    
T  2185959 ttaattaatttaatttttaaaaaatatattatcggatacttatatgatactccatatatacacaaggatacttataagatacttcacatatatgtatc 2185862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 290 - 484
Target Start/End: Original strand, 48152834 - 48153029
Alignment:
Q  290 ccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgactta 389  Q
    ||||||||||||||||||| ||||| | ||||| ||||||||||  |||  |||||| ||| ||||||| |||| ||| | || |||||| || || |||    
T  48152834 ccggatactccaaaacggagacgtatctgtatcggatacgtattggatactgatactccacggatactcgcggacacgcacccacgaagtatcagaatta 48152933  T
Q  390 aataatttaatttctaaaaaat-attttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    | || || ||||| |||||||  |||| | | |||||||||| |||| |    |||||||| |  |||||||||||||| ||||||||||||||||    
T  48152934 attatttaaatttttaaaaaaacatttaaacggatacttatacgatactctgcagatacacaaggatacttataagatatttcacatatacgtatc 48153029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 484
Target Start/End: Complemental strand, 3751768 - 3751620
Alignment:
Q  336 atatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagata 435  Q
    ||||||||||| ||| |||| ||  ||||||||| || ||| || || || |||| || || ||||  |||||| ||||||| |||||||||||| | ||    
T  3751768 atatcgatactccacggatattcgtggatacgtacccacgacgtatcggagttaattatttcaattgttaaaaattattttatcagatacttatatgtta 3751669  T
Q  436 tttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
     | || |||||||| | ||||||| ||||||||||||||||||| ||||    
T  3751668 ctgcagagatacacaaaaatacttttaagatacttcacatatacatatc 3751620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 484
Target Start/End: Original strand, 48138349 - 48138497
Alignment:
Q  336 atatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagata 435  Q
    ||||||||| | ||| |||||||||||||||||| |  |||| | || || |||| || ||||||||  || | |||||||| | |||||||||||||||    
T  48138349 atatcgataatccacggatactctcggatacgtacctacgaaatatcggaattaattattttaatttaaaatatatattttatcggatacttataagata 48138448  T
Q  436 tttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
     |  | ||||||||   |||||||||||||||||||||| | |||||||    
T  48138449 ctcgacagatacacacaaatacttataagatacttcacagagacgtatc 48138497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 435
Target Start/End: Complemental strand, 9229661 - 9229518
Alignment:
Q  292 ggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaa 391  Q
    |||||| |||||| ||| |||||||||||   ||||||||||  || |||||||| | |||||||||||||||||||| || || ||| || || ||||     
T  9229661 ggataccccaaaatggagacgtacccgtactggatacgtattggatttcgatactccgcagatactctcggatacgtacccacggagtatcagaattaat 9229562  T
Q  392 taatttaatttctaaaaaatattttaccagatacttataagata 435  Q
    || ||||||||  || | ||||||||   |||||||||||||||    
T  9229561 tattttaatttaaaatatatattttattggatacttataagata 9229518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 508
Target Start/End: Complemental strand, 47844035 - 47843869
Alignment:
Q  340 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 439  Q
    ||||||| ||| ||||||| |||||||||| || |||||| ||| | |||| || ||| |||| | |||||||||||| | |||||||||| |||| | |    
T  47844035 cgatactccacggatactcgcggatacgtacccacgaagtatctcaattaattattttgattttttaaaaatattttatcggatacttatatgatactcc 47843936  T
Q  440 atagatacaccataatacttataagatacttcacatatacgtatcataggacaaaaaatgaagggtaaa 508  Q
      ||||| || |  |||||| ||||||||||||| ||| |||||| |||   |||| ||||||||||||    
T  47843935 gcagatagacaaggatacttctaagatacttcacgtatgcgtatcctag--aaaaagatgaagggtaaa 47843869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 471
Target Start/End: Complemental strand, 42040775 - 42040595
Alignment:
Q  291 cggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaa 390  Q
    |||||||||||||||||| |||||| |||| | ||||||||| | ||| ||||||| ||| ||||||   |||||||||| | |||||| ||  | ||      
T  42040775 cggatactccaaaacggagacgtactcgtaccggatacgtatcagataccgatactccacggatacttgtggatacgtattcacgaagtatcataattgg 42040676  T
Q  391 ataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttc 471  Q
     || |||||||| ||| |||||||||| | |||||||||  |||| |  | |||||||| |  |||||| |||||||||||    
T  42040675 ttattttaatttttaataaatattttatcggatacttatgggatactctacagatacacaaggatacttctaagatacttc 42040595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 484
Target Start/End: Complemental strand, 43496009 - 43495878
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 451  Q
    ||||||| |||||||| | |  |||||| || || |||| || || |||||  ||||||||||||| | |||||||||| |||| |   ||||||||| |    
T  43496009 gatactcgcggatacgcacctacgaagtatccgaattaattatttaaatttaaaaaaaatattttaacggatacttatacgatactctgtagatacac-a 43495911  T
Q  452 taatacttataagatacttcacatatacgtatc 484  Q
    ||||||||||||||||||||||| ||| |||||    
T  43495910 taatacttataagatacttcacagatatgtatc 43495878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 484
Target Start/End: Complemental strand, 45648480 - 45648348
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 451  Q
    ||||||| |||||||||| || |||||| || || |||| || |||||||| ||| |||||||||| | | |||||||  |||| | || |||||||  |    
T  45648480 gatactcgcggatacgtacccacgaagtatcggaattaattattttaatttttaataaatattttatcgggtacttatgtgatactccacagatacataa 45648381  T
Q  452 taatacttataagatacttcacatatacgtatc 484  Q
      |||||| |||||||||||||| |||||||||    
T  45648380 ggatacttctaagatacttcacagatacgtatc 45648348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 40836297 - 40836390
Alignment:
Q  394 atttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatcatag 488  Q
    |||||| || |||||||||||||| |||||||| ||| |||| | |  |||||||| |  ||||||||||| ||||||||| |||||||||||||    
T  40836297 atttaaattttaaaaaatattttaacagatact-atacgatactccgcagatacacaaacatacttataaggtacttcacagatacgtatcatag 40836390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 484
Target Start/End: Complemental strand, 22543573 - 22543484
Alignment:
Q  395 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    |||||||| |||||||||||||| | |||||||||| |||| |  | | |||||| | ||||||  ||||||||||||||||||| ||||    
T  22543573 tttaatttttaaaaaatattttatcggatacttatatgatactctacatatacacaaaaatactcttaagatacttcacatatacatatc 22543484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 484
Target Start/End: Original strand, 45492067 - 45492156
Alignment:
Q  395 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    ||||||||  |||| |||| ||| | |||||||||| |||| | ||||| ||||| || |||||||||||||||||| |||||| |||||    
T  45492067 tttaatttaaaaaatatatattatcggatacttatatgatactccataggtacacaatgatacttataagatacttcgcatatatgtatc 45492156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 435
Target Start/End: Original strand, 45804788 - 45804884
Alignment:
Q  340 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttct-aaaaaatattttaccagatacttataagata 435  Q
    ||||||||||| |||| ||  |||||||||| | |||||| || || |||| || |||||||| | ||||||||||||| ||||||| |||||||||    
T  45804788 cgatacttcacggatattcgaggatacgtattcacgaagtatcggaattaattattttaattttttaaaaaatattttatcagatacatataagata 45804884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 24699709 - 24699792
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagata 435  Q
    ||||||||||||||||||||| || ||| || || |||| || ||||||||  || | |||||||| | |||||||||||||||    
T  24699709 gatactctcggatacgtatccacggagtatcggaattaattattttaatttaaaatatatattttatcggatacttataagata 24699792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 2647283 - 2647317
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||| ||||||    
T  2647283 cgtgtcacgattttgggaaaacgtgacatgatttt 2647317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 4539029 - 4538995
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  4539029 cgtgacacgattttgggaaaacgtgacacgatttt 4538995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 14070312 - 14070278
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  14070312 cgtgacacgattttgggaaaacgtgacacgatttt 14070278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 14380340 - 14380306
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  14380340 cgtgacacgattttgggaaaacgtgacacgatttt 14380306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 23554729 - 23554763
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  23554729 cgtgacacgattttgggaaaacgtgacacgatttt 23554763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 43863951 - 43863985
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  43863951 cgtgacacgattttgggaaaacgtgacacgatttt 43863985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 47674421 - 47674387
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  47674421 cgtgacacgattttgggaaaacgtgacacgatttt 47674387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 47676614 - 47676580
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  47676614 cgtgacacgattttgggaaaacgtgacacgatttt 47676580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 49092203 - 49092169
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||| |||||||||||||    
T  49092203 cgtgtcacgattttgggaaaatgtgacacgatttt 49092169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 565
Target Start/End: Original strand, 33332037 - 33332070
Alignment:
Q  532 gtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| ||||||||||||||||||    
T  33332037 gtgtcacgattttggaaaaacgtgacacgatttt 33332070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Complemental strand, 2761687 - 2761652
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||||    
T  2761687 aacgtgtcacgattt-gggaaaacgtgacacgatttt 2761652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 5474905 - 5474841
Alignment:
Q  291 cggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagata 355  Q
    |||||| ||||||||||| |||||||| |||| |||| |||||  ||||||||||| ||| ||||    
T  5474905 cggatattccaaaacggagacgtacccatatcggatatgtattggatatcgatactccacggata 5474841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Complemental strand, 14070218 - 14070183
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14070218 aacgtgtcacgattt-gggaaaacgtgacacgatttt 14070183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Complemental strand, 14380246 - 14380211
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14380246 aacgtgtcacgattt-gggaaaacgtgacacgatttt 14380211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 24911733 - 24911769
Alignment:
Q  404 taaaaaatattttaccagatacttataagatatttca 440  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  24911733 taaaaaatattttaccaaatacttataagataattca 24911769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 293 - 484
Target Start/End: Complemental strand, 38221929 - 38221738
Alignment:
Q  293 gatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaat 392  Q
    |||||||||||||||| ||||||||||||| ||||||||||  ||| ||||||| ||| ||||||| |||||||| | || |||||| || || |||| |    
T  38221929 gatactccaaaacggagacgtacccgtatcggatacgtattggataccgatactccacggatactcgcggatacgcacccacgaagtatcggaattaatt 38221830  T
Q  393 aatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    | || ||||| |||||||||||||| |  ||||||||| |||| |||  |||||||| |  ||| ||| ||||||||||||||||| |||||    
T  38221829 atttaaatttttaaaaaatattttaacgaatacttatacgatacttcgcagatacacaaggatatttacaagatacttcacatatatgtatc 38221738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 287 - 484
Target Start/End: Original strand, 26352394 - 26352591
Alignment:
Q  287 agtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgac 386  Q
    |||||| ||||||||||| ||| | ||||||||||||||||||||| | ||| ||||||||||||||||||| |||||||||| || |  ||| || ||     
T  26352394 agtccgaatactccaaaatggagatgtacccgtatcagatacgtatcagataccgatacttcacagatactcgcggatacgtacccactgagtatcggaa 26352493  T
Q  387 ttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacac-cataatacttataagatacttcacatatacgtatc 484  Q
    |||| || ||||||||  || | ||||||||   ||||||||||||||| |  ||| |||||| ||| ||||||||||||||||||||||| |||||||    
T  26352494 ttaattattttaatttaaaatatatattttattggatacttataagatactcgataaatacacacat-atacttataagatacttcacataaacgtatc 26352591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 294 - 490
Target Start/End: Original strand, 40498389 - 40498585
Alignment:
Q  294 atactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaata 393  Q
    ||||| ||||||||| || || ||||||  |||||| ||   ||| ||||||| |||||||||||  ||||||| | || |||||| ||  |||||| ||    
T  40498389 atactacaaaacggagacatatccgtattggatacgaatcggataccgatactccacagatactcgtggatacgcacccacgaagtatcgaacttaatta 40498488  T
Q  394 atttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatcatagga 490  Q
     || ||||| |||||||||||||| | ||||||||||||||| | | ||||||||| |  ||| ||||||||||||||| ||||||||||| |||||    
T  40498489 tttaaatttttaaaaaatattttaacggatacttataagatactccgtagatacacaaggatatttataagatacttcatatatacgtatcctagga 40498585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 394 - 490
Target Start/End: Original strand, 17328615 - 17328711
Alignment:
Q  394 atttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatcatagga 490  Q
    |||||||||  ||||||||| ||| | |||||||||| |||| | ||||||||||| || ||||||||||||||||||||||||| ||||| |||||    
T  17328615 atttaatttaaaaaaaatatattatcggatacttatatgatactccatagatacacaatgatacttataagatacttcacatatatgtatcctagga 17328711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 474
Target Start/End: Original strand, 36467024 - 36467196
Alignment:
Q  301 aaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaat 400  Q
    |||||||| |||||||| |||| |||| ||||   ||| ||||||| ||||||||||   | |||||||  | |||||| || || |||| || ||||||    
T  36467024 aaaacggagacgtacccatatcggatatgtatcggataccgatactccacagatacttgtgaatacgtactcacgaagtatcggaattaattattttaat 36467123  T
Q  401 ttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 474  Q
    ||  ||||||||||||| | |||||||||| |||| | || |||||||| |  |||||||||||||||||||||    
T  36467124 tta-aaaaaatattttatctgatacttataggataatccacagatacacaaagatacttataagatacttcaca 36467196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 483
Target Start/End: Complemental strand, 11563010 - 11562848
Alignment:
Q  319 tatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttac 418  Q
    |||| ||||| ||| | ||| ||||||||||| ||||||| ||||||||||||| ||||||  | || ||||  | |||||||| | ||||||||||||     
T  11563010 tatcggatacatatcagataccgatacttcacggatactcgcggatacgtatccacgaagtaccgga-ttaataattttaattttttaaaaatattttat 11562912  T
Q  419 cagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtat 483  Q
    | |||||||||  ||||   | || |||||| | |||||||||||||||||||||| ||||||||    
T  11562911 ctgatacttat-ggataccccgtaaatacacaaaaatacttataagatacttcacaaatacgtat 11562848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 429
Target Start/End: Complemental strand, 42795069 - 42794921
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 380  Q
    |||| ||| ||| ||||||||||||||| |||||||| ||   |||||||||  |||| ||||||| ||| ||||||| |||||||||||||  |||||     
T  42795069 ctatgaagcccgaatactccaaaacggagacgtacccatactggatacgtatggaataccgatactccacggatactcgcggatacgtatccatgaagta 42794970  T
Q  381 tctgacttaaataatttaatttctaaaaaatattttaccagatacttat 429  Q
    || || || | || |||||||| ||| ||| |||||| | |||||||||    
T  42794969 tcagaattgattattttaatttttaataaacattttatcggatacttat 42794921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 8389733 - 8389767
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  8389733 cgtgtcacgattttgggaaaacgtgacacgatttt 8389767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 484
Target Start/End: Complemental strand, 30383077 - 30382915
Alignment:
Q  322 cagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccag 421  Q
    ||||||||||||  |||  |||||| |||  |||||| |||||||||| || |||||| || || |||| || |||||||| |||||||||||||| | |    
T  30383077 cagatacgtattggatacagatactccacgaatactcgcggatacgtacccacgaagtatcggagttaattattttaatttttaaaaaatattttatcgg 30382978  T
Q  422 atacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    |||| |||| |||| | || | |||||| |   | ||||||||||  ||||| ||||||||||    
T  30382977 atacatatatgataatccacaaatacacaaaggtccttataagatttttcacttatacgtatc 30382915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 33528209 - 33528243
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  33528209 cgtgtcacgattttgggaaaacgtgacacgatttt 33528243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 39483388 - 39483354
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  39483388 cgtgtcacgattttgggaaaacgtgacacgatttt 39483354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 532 - 565
Target Start/End: Original strand, 10706839 - 10706872
Alignment:
Q  532 gtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||||||||||||||||    
T  10706839 gtgtcacgattttgggaaaacgtgacacgatttt 10706872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 532 - 565
Target Start/End: Original strand, 23078058 - 23078091
Alignment:
Q  532 gtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||||||||||||||||    
T  23078058 gtgtcacgattttgggaaaacgtgacacgatttt 23078091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 41323719 - 41323755
Alignment:
Q  292 ggatactccaaaacggaaacgtacccgtatcagatac 328  Q
    ||||||||||||||||| |||||||||||||||||||    
T  41323719 ggatactccaaaacggacacgtacccgtatcagatac 41323755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 2837322 - 2837288
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  2837322 cgtgacacgattttgggaaaacgtgacacgatttt 2837288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 565
Target Start/End: Original strand, 14698599 - 14698629
Alignment:
Q  535 tcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||    
T  14698599 tcacgattttgggaaaacgtgacacgatttt 14698629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 435
Target Start/End: Original strand, 14749364 - 14749518
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 380  Q
    |||| ||| |||||||| |||||| ||| ||||||| |||   |||||||||   ||  ||||||| | | |||||||||||||||||| || || |||     
T  14749364 ctatgaagcccggataccccaaaatggagacgtacctgtactggatacgtatcggattccgatactccgcggatactctcggatacgtacccacggagta 14749463  T
Q  381 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagata 435  Q
    || || |||| || ||||||||  || | |||||||| | |||||||||||||||    
T  14749464 tcagaattaattattttaatttaaaatatatattttatcggatacttataagata 14749518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 20522733 - 20522699
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||    
T  20522733 cgtgtcacgattttgagaaaacgtgacacgatttt 20522699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 29867569 - 29867603
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  29867569 cgtgacacgattttgggaaaacgtgacacgatttt 29867603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 34389362 - 34389328
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  34389362 cgtgacacgattttgggaaaacgtgacacgatttt 34389328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 356
Target Start/End: Original strand, 35298246 - 35298316
Alignment:
Q  286 aagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatac 356  Q
    ||||||||||||||||||||  | ||||||| ||||| |||||||||   ||| ||||||| |||||||||    
T  35298246 aagtccggatactccaaaacaaagacgtacctgtatcggatacgtatcggataccgatactccacagatac 35298316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 483
Target Start/End: Original strand, 35298370 - 35298432
Alignment:
Q  421 gatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtat 483  Q
    |||||||||| |||| | || |||||||| |  ||| ||||||||||||||||||||||||||    
T  35298370 gatacttatatgatactccacagatacacaaagatatttataagatacttcacatatacgtat 35298432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 565
Target Start/End: Complemental strand, 17865687 - 17865655
Alignment:
Q  533 tgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||| |||||||||||||    
T  17865687 tgtcacgattttgggaaaatgtgacacgatttt 17865655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Original strand, 29867651 - 29867687
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| || ||||||||||||||||||    
T  29867651 aacgtgtcacgatttgggaaaaacgtgacacgatttt 29867687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 281 - 508
Target Start/End: Original strand, 7056899 - 7057121
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 380  Q
    |||| ||||| ||||||||||||||||| ||||||| |||||||||| ||||   ||| |||||||  || |||||||  | ||||||| || ||||||     
T  7056899 ctatgaagtctggatactccaaaacggagacgtacctgtatcagataagtatcggataccgatactctacggatactcgtgaatacgtacccacgaagta 7056998  T
Q  381 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacg 480  Q
    ||  | |||| || |||||||| |||||||||||||| | |||||||||| |||| | ||||||||||| |  ||||||||||||| ||||||||||| |    
T  7056999 tcgaaattaa-tattttaatttttaaaaaatattttatctgatacttataggatactccatagatacacaaggatacttataagatgcttcacatatatg 7057097  T
Q  481 tatcataggacaaaaaatgaagggtaaa 508  Q
    |||| |||    ||||||||||||||||    
T  7057098 tatcctag----aaaaatgaagggtaaa 7057121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 281 - 484
Target Start/End: Complemental strand, 29231405 - 29231202
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 380  Q
    |||| ||||||||||||||||||||||| | || |||||| | |||||||||   ||| ||||||| ||| |||| || | |||||||||||  |||||     
T  29231405 ctatgaagtccggatactccaaaacggagatgtgcccgtaccggatacgtatcggataccgatactccacggatattcgcagatacgtatccaagaagta 29231306  T
Q  381 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacg 480  Q
    || || |||| || |||||||| ||| |||||||||| | |||||||||  |||| | || | |||||| |  ||| || |||||||||||||| | |||    
T  29231305 tcggaattaattattttaatttttaataaatattttatcggatacttatgtgatactccacatatacacaaggatatttttaagatacttcacagacacg 29231206  T
Q  481 tatc 484  Q
    ||||    
T  29231205 tatc 29231202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 508
Target Start/End: Complemental strand, 31114252 - 31114099
Alignment:
Q  353 atactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccat 452  Q
    |||||| ||||| |||||||   |||| || || |||| || |||||||| |||||||||| ||| ||||||||||||  ||| |||| | ||||||  |    
T  31114252 atactcgcggatgcgtatccataaagtatcagaattaattattttaatttttaaaaaatatattatcagatacttatataatacttcaaaaatacacatt 31114153  T
Q  453 aatacttataagatacttcacatatacgtatcataggacaaaaaatgaagggtaaa 508  Q
     |||||||||||||||||| |||||  ||||| |||   |||||||||||||||||    
T  31114152 gatacttataagatacttcgcatatgtgtatcctag--aaaaaaatgaagggtaaa 31114099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 8229134 - 8229209
Alignment:
Q  289 tccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggat 364  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||| | ||| ||||||| ||| ||||||| |||||    
T  8229134 tccggataccccaaaacggagacgtacccgtatcggatacgtatcagataccgatactccacggatactcgcggat 8229209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 508
Target Start/End: Original strand, 3387135 - 3387300
Alignment:
Q  340 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 439  Q
    ||||||| || ||||| || ||||||| || || |||||| ||  | |||| || |||||||| | ||||||| |||| || |||| ||||||||| |||    
T  3387135 cgatactccaaagatattcgcggatacatacccacgaagtatcaaaattaattattttaatttttgaaaaataatttatcaaatacatataagatacttc 3387234  T
Q  440 atagatacaccataatacttataagatacttcacatatacgtatcataggacaaaaaatgaagggtaaa 508  Q
    |  ||||||| | |||||||||||||| |||| || ||||||||| |||   |||| ||||||||||||    
T  3387235 acggatacacaaaaatacttataagatgcttcgcaaatacgtatcctag---aaaagatgaagggtaaa 3387300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 11916557 - 11916591
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  11916557 cgtgtcacgattttgggaaaacgtgacacgatttt 11916591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 484
Target Start/End: Complemental strand, 19100301 - 19100157
Alignment:
Q  340 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 439  Q
    ||||||||||| ||||||| |||||| ||| |  |||||| |   | |||| || |||||||| ||| |||||||||| | |||||||||  |||| | |    
T  19100301 cgatacttcacggatactcgcggatatgtacctacgaagtattgaaattaattattttaatttttaataaatattttatcggatacttatgtgatactcc 19100202  T
Q  440 atagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    | | |||||| |  |||||| |||||||||||||| |||||||||    
T  19100201 acatatacacaaggatacttctaagatacttcacagatacgtatc 19100157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 472
Target Start/End: Original strand, 27925149 - 27925332
Alignment:
Q  290 ccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgactta 389  Q
    |||||||||||||||| || |||||| |||||| ||||||||| | ||| |||| || ||| |||| || |||||| ||| |   ||||| || || |||    
T  27925149 ccggatactccaaaacagagacgtactcgtatcggatacgtatcagataccgatcctccactgatattcgcggatatgtacctatgaagtatcggagtta 27925248  T
Q  390 aataatttaatttctaaaaa-atattttaccagatacttataagatatttcatagatacaccataatacttataagatacttca 472  Q
    | || ||||||||  ||||| |||||||||  |||||||| | |||| | || |||||||| |  ||||||| | |||||||||    
T  27925249 attattttaatttaaaaaaatatattttacatgatacttaaatgatactgcacagatacacaaggatacttacatgatacttca 27925332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 213034 - 213068
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  213034 cgtgacacgattttgggaaaacgtgacacgatttt 213068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 488
Target Start/End: Original strand, 8229269 - 8229303
Alignment:
Q  454 atacttataagatacttcacatatacgtatcatag 488  Q
    |||||||||||| ||||||||||||||||||||||    
T  8229269 atacttataagacacttcacatatacgtatcatag 8229303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 14520741 - 14520707
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||| |||||||||||||||||||||||||||    
T  14520741 cgtgtcatgattttgggaaaacgtgacacgatttt 14520707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 42428896 - 42428862
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  42428896 cgtgacacgattttgggaaaacgtgacacgatttt 42428862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 484
Target Start/End: Complemental strand, 13407473 - 13407384
Alignment:
Q  395 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    |||||||| |||||||||||||| | ||||||| |  |||| | |||  |||||| | |||| ||||||||||| ||||| |||||||||    
T  13407473 tttaatttttaaaaaatattttatctgatactttttggatactccattaatacacaagaatatttataagatacgtcacaaatacgtatc 13407384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Original strand, 533552 - 533587
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||||    
T  533552 aacgtgtcacgattt-gggaaaacgtgacacgatttt 533587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 504
Target Start/End: Complemental strand, 12848594 - 12848547
Alignment:
Q  454 atacttataagatacttcacatatacgtatcataggacaaaaaatgaaggg 504  Q
    ||||||||||||||||| ||||||||||||| |||   |||||||||||||    
T  12848594 atacttataagatactttacatatacgtatcttag---aaaaaatgaaggg 12848547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 447
Target Start/End: Complemental strand, 14202951 - 14202899
Alignment:
Q  395 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatac 447  Q
    |||||||| |||||||| ||| | | |||||||||||||||||||||| ||||    
T  14202951 tttaatttttaaaaaatctttcatcggatacttataagatatttcataaatac 14202899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 564
Target Start/End: Complemental strand, 16651095 - 16651067
Alignment:
Q  536 cacgattttgggaaaacgtgacacgattt 564  Q
    |||||||||||||||||||||||||||||    
T  16651095 cacgattttgggaaaacgtgacacgattt 16651067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 474
Target Start/End: Complemental strand, 34764856 - 34764724
Alignment:
Q  342 atacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcat 441  Q
    ||||| ||| ||||||| |||||||| | || |||||| || || |||| || || |||||  ||||||||||||| |  ||||||||| |||| | ||     
T  34764856 atactccacggatactcgcggatacgcacccacgaagtatcagaattaattatttaaattttaaaaaaatattttatcgaatacttatatgatactccac 34764757  T
Q  442 agatacaccataatacttataagatacttcaca 474  Q
    | |||||| |  ||||||||||| |||||||||    
T  34764756 aaatacacaaggatacttataaggtacttcaca 34764724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 290 - 474
Target Start/End: Complemental strand, 11789692 - 11789508
Alignment:
Q  290 ccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgactta 389  Q
    ||||||||||||||||||| |||| |||||| ||||||||||| | ||| ||||||| ||| ||||||| ||||||||||||| |||||| || || |||    
T  11789692 ccggatactccaaaacggagacgtgcccgtaccagatacgtatcagataccgatactccacggatactcgcggatacgtatccacgaagtatcagaatta 11789593  T
Q  390 aataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcaca 474  Q
    | || |||||||| ||| |||||||||| | ||||||| |  |||| | || | |||||| || ||||||  |||||||||||||    
T  11789592 attattttaatttttaataaatattttatcggatacttgtgtgatactccacaaatacacaatgatacttccaagatacttcaca 11789508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 289 - 484
Target Start/End: Complemental strand, 11755987 - 11755792
Alignment:
Q  289 tccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgactt 388  Q
    |||||||||| ||||||||| || || ||||||  ||||  ||||  |||  ||||||| || |||||||| |||||||||| | |||||| |   | ||    
T  11755987 tccggatacttcaaaacggagacatatccgtattggatatatattggatactgatactttacggatactcttggatacgtattcacgaagtattataatt 11755888  T
Q  389 aaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    ||||| |||||||| |||||||||||||| | |||||||||||||||||  | ||||| ||||  |||||||||||||||||||||||||| ||||    
T  11755887 aaatattttaatttttaaaaaatattttatcggatacttataagatattctacagatagaccaggatacttataagatacttcacatatacatatc 11755792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 374 - 484
Target Start/End: Original strand, 18320613 - 18320723
Alignment:
Q  374 cgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcac 473  Q
    |||||| ||||| ||||||| |||||||  ||||||| |||||| |||||| |||||| ||| |||||||||| | ||  ||||||||||||||||||||    
T  18320613 cgaagtatctgaattaaatattttaattcttaaaaaacattttatcagatagttataaaatacttcatagatatatcaggatacttataagatacttcac 18320712  T
Q  474 atatacgtatc 484  Q
    |||||||||||    
T  18320713 atatacgtatc 18320723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 281 - 472
Target Start/End: Original strand, 9409727 - 9409918
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 380  Q
    |||| ||| ||||||| |||||||| || ||||||||||| |  ||||||||   ||| ||||||| ||| ||||||| ||||||||||||| ||||||     
T  9409727 ctatgaagcccggatattccaaaacagagacgtacccgtaccgaatacgtatcggataccgatactccacggatactcacggatacgtatccacgaagta 9409826  T
Q  381 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttca 472  Q
    ||  | |||| || |||||||| ||| |||||| ||| | |||||||||  |||| | || |||||||| |  |||||| ||||||||||||    
T  9409827 tcataattaattattttaatttttaataaatatgttatcggatacttatgggatactccacagatacacaaggatacttctaagatacttca 9409918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 24728858 - 24728766
Alignment:
Q  280 cctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcc 372  Q
    ||||| ||| ||||||||||||||||||| |||||| |||||| ||||||||| | ||| | ||||| ||| ||||||| |||||||||||||    
T  24728858 cctatgaagcccggatactccaaaacggagacgtactcgtatcggatacgtatcagataccaatactccacggatactcgcggatacgtatcc 24728766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 342 - 508
Target Start/End: Original strand, 25429878 - 25430042
Alignment:
Q  342 atacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcat 441  Q
    ||||| ||| ||||||| |||||||||| ||  ||||| || || |||| || |||||||| |||||||||| |||   |||||||||| |||| | ||     
T  25429878 atactccacggatactcgcggatacgtacccatgaagtatcagaattaattattttaatttttaaaaaatatattaatggatacttatatgataatccac 25429977  T
Q  442 agatacaccataatacttataagatacttcacatatacgtatcataggacaaaaaatgaagggtaaa 508  Q
    |||||||| |  |||||||||||||||||| |||||| ||||| |||   |||| ||||||||||||    
T  25429978 agatacacaaggatacttataagatacttcgcatatatgtatcctag--aaaaagatgaagggtaaa 25430042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 484
Target Start/End: Complemental strand, 17749167 - 17749023
Alignment:
Q  340 cgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttc 439  Q
    ||||||| |||||||| |  |||||||| | || ||||||  | || |||| || || ||||| |||||||||||||| | |||||||||| |||| |||    
T  17749167 cgatactccacagatatttgcggatacgcacccacgaagtaacagaattaattatttaaatttttaaaaaatattttaacggatacttatacgatacttc 17749068  T
Q  440 atagatacaccataatacttataagatacttcacatatacgtatc 484  Q
      ||||||||    ||||||||||||||||||||| |||||||||    
T  17749067 gcagatacacatggatacttataagatacttcacaaatacgtatc 17749023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 509
Target Start/End: Complemental strand, 24889025 - 24888870
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 451  Q
    ||||||| |||||||||| ||  ||||| || || |||| || |||||||| |||||||||| |||   |||||||||| |||| | || | ||| || |    
T  24889025 gatactcgcggatacgtacccatgaagtatcagaattaattattttaatttttaaaaaatatattattggatacttatatgatactccacaaatagacaa 24888926  T
Q  452 taatacttataagatacttcacatatacgtatcataggacaaaaaatgaagggtaaac 509  Q
      |||||||||||||||||| |||||| ||||| ||  | |||| |||||||||||||    
T  24888925 ggatacttataagatacttcgcatatatgtatccta--aaaaaagatgaagggtaaac 24888870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 40221236 - 40221270
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  40221236 cgtgtcacgattttgggaaaacgtgacacgatttt 40221270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 18928765 - 18928685
Alignment:
Q  404 taaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    |||||||||||||  | |||||||||| |||| | || | |||||| || ||||||||||||||||| |||||||| ||||    
T  18928765 taaaaaatattttgtcggatacttatatgatactccacatatacacaatgatacttataagatactttacatatacttatc 18928685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 4733515 - 4733549
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  4733515 cgtgacacgattttgggaaaacgtgacacgatttt 4733549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 5702065 - 5702099
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||| ||||||||||||||||||    
T  5702065 cgtgtcacgattttggaaaaacgtgacacgatttt 5702099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 12703117 - 12703083
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  12703117 cgtgacacgattttgggaaaacgtgacacgatttt 12703083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 478
Target Start/End: Original strand, 13003232 - 13003357
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 451  Q
    ||||||| |||||||||| || | |||| ||  | |||| || |||||||| |||||||||||||| |  ||||||||| |||| | ||||||| ||| |    
T  13003232 gatactcgcggatacgtacccacaaagtatcataattaattattttaattt-taaaaaatattttatctaatacttatatgatactccatagattcacaa 13003330  T
Q  452 taatacttataagatacttcacatata 478  Q
      ||||||| |||||| ||||||||||    
T  13003331 agatacttacaagatatttcacatata 13003357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 318 - 435
Target Start/End: Original strand, 14179887 - 14180002
Alignment:
Q  318 gtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatatttta 417  Q
    ||||||||||||||||| ||| ||||||| |||| |||||  |||||| |||||| |||| | |  ||  ||| || |||||||||  ||| ||||||||    
T  14179887 gtatcagatacgtattagataccgatactccacatatacttgcggatatgtatccacgaaatattggaaataattattttaatttc--aaatatatttta 14179984  T
Q  418 ccagatacttataagata 435  Q
     | |||||||||||||||    
T  14179985 tcggatacttataagata 14180002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 15212476 - 15212510
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  15212476 cgtgacacgattttgggaaaacgtgacacgatttt 15212510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 19175318 - 19175352
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||| ||||||    
T  19175318 cgtgtcacgattttgggaaaacgtgacatgatttt 19175352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 22976006 - 22976040
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  22976006 cgtgacacgattttgggaaaacgtgacacgatttt 22976040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 565
Target Start/End: Original strand, 11383483 - 11383512
Alignment:
Q  536 cacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||||||||||||    
T  11383483 cacgattttgggaaaacgtgacacgatttt 11383512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Original strand, 8910976 - 8911012
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| | |||||||||||||||||||    
T  8910976 aacgtgtcacgatttggtgaaaacgtgacacgatttt 8911012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Original strand, 43036206 - 43036241
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||||    
T  43036206 aacgtgtcacgattt-gggaaaacgtgacacgatttt 43036241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 291 - 484
Target Start/End: Original strand, 2295180 - 2295373
Alignment:
Q  291 cggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaa 390  Q
    ||||||||| ||||| || ||||||||||| | ||||||| |   ||| ||||||| ||  ||||||| ||||||||||||| |||||| || || ||||    
T  2295180 cggatactcaaaaacagagacgtacccgtaccggatacgtgtcggataccgatactccaaggatactcgcggatacgtatccacgaagtatcggaattaa 2295279  T
Q  391 ataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
     || |||||||| ||| |||||||||| |||||| ||||  |||||| || |||||||| || |||||| |||||||||||||| | |||||||    
T  2295280 ttattttaatttttaataaatattttatcagatatttatgggatattccacagatacacaatgatacttctaagatacttcacagacacgtatc 2295373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 342 - 484
Target Start/End: Complemental strand, 47923213 - 47923071
Alignment:
Q  342 atacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcat 441  Q
    ||||||||| ||||||| | |||||||| || || ||| ||  | |||| || ||||||||  ||||||||||||| | |||||||||| |||||||||     
T  47923213 atacttcacggatactcgcagatacgtacccacggagtatcataattaattattttaattttaaaaaaatattttatcggatacttatatgatatttcac 47923114  T
Q  442 agatacaccataatacttataagatacttcacatatacgtatc 484  Q
    |||||||| || |||||| ||||||||||||||| ||| ||||    
T  47923113 agatacacaatgatacttctaagatacttcacatttacatatc 47923071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 446
Target Start/End: Complemental strand, 4214241 - 4214094
Alignment:
Q  294 atactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaata 393  Q
    |||||||||||  || ||||| |||||| ||||||||||     | ||||||||||| | ||||| | |||||||| || ||||||  | || |||| ||    
T  4214241 atactccaaaatagagacgtatccgtattagatacgtat-----accgatacttcacgggtactcgcagatacgtacccacgaagtaccagaattaatta 4214147  T
Q  394 atttaatttctaaaaaatattttaccagatacttataagatatttcatagata 446  Q
     |||||||| |||||||||||||| | |||||||||| |||| ||||||||||    
T  4214146 ttttaatttttaaaaaatattttatctgatacttatatgatacttcatagata 4214094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 421 - 484
Target Start/End: Complemental strand, 7208689 - 7208626
Alignment:
Q  421 gatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    |||||||||| ||||||||| | |||||| |||||||||||||||||||||||| |||| ||||    
T  7208689 gatacttatatgatatttcacatatacacaataatacttataagatacttcacagatacatatc 7208626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 3778060 - 3778026
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  3778060 cgtgtcacgattttgggaaaacgtgacacgatttt 3778026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 5268785 - 5268819
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  5268785 cgtgtcacgattttgggaaaacgtgacacgatttt 5268819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 16628457 - 16628491
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  16628457 cgtgtcacgattttgggaaaacgtgacacgatttt 16628491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 36314816 - 36314850
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  36314816 cgtgtcacgattttgggaaaacgtgacacgatttt 36314850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 36329025 - 36329059
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  36329025 cgtgtcacgattttgggaaaacgtgacacgatttt 36329059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 40630456 - 40630490
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  40630456 cgtgtcacgattttgggaaaacgtgacacgatttt 40630490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 531 - 564
Target Start/End: Complemental strand, 10047876 - 10047843
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgattt 564  Q
    ||||||||||||||||||||||||||||||||||    
T  10047876 cgtgtcacgattttgggaaaacgtgacacgattt 10047843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 484
Target Start/End: Complemental strand, 19721920 - 19721831
Alignment:
Q  395 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    |||||||| ||| |||||||||| | |||||||||  |||| | || |||||||| || ||| || |||||||||||||||| |||||||    
T  19721920 tttaatttttaataaatattttatcggatacttatgtgatactccacagatacacaatgatatttctaagatacttcacatacacgtatc 19721831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 407 - 472
Target Start/End: Complemental strand, 35823788 - 35823723
Alignment:
Q  407 aaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttca 472  Q
    |||||| |||| | ||||||||||||||| ||||||||||| | |  |||||||||||||||||||    
T  35823788 aaaataatttatctgatacttataagatacttcatagatacccaaagatacttataagatacttca 35823723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 38948778 - 38948698
Alignment:
Q  292 ggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcc 372  Q
    ||||||||||||| ||| ||||| ||||||  |||||||||   ||| ||||||| ||| ||||||||||||||| |||||    
T  38948778 ggatactccaaaatggagacgtatccgtattggatacgtatcggataccgatactccacggatactctcggatacatatcc 38948698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 40216791 - 40216855
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatac 345  Q
    |||| |||||||||||||||||||| ||||| |||||||||| |||| ||||   ||||||||||    
T  40216791 ctatgaagtccggatactccaaaacagaaacatacccgtatcggatatgtatcggatatcgatac 40216855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 53586219 - 53586270
Alignment:
Q  294 atactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatac 345  Q
    ||||||||||||||  |||||||||||||||||||||||  |||| ||||||    
T  53586219 atactccaaaacggtgacgtacccgtatcagatacgtatcgaataccgatac 53586270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 1052289 - 1052363
Alignment:
Q  405 aaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatac 479  Q
    ||||||||| ||| | |||| ||||| |||| | |  |||||||| || ||||||||||||||||||||||||||    
T  1052289 aaaaaatatattaacggatatttatacgatactccgcagatacacaatgatacttataagatacttcacatatac 1052363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 5396276 - 5396310
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||| ||||||||||||||||||    
T  5396276 cgtgtcacgattttggaaaaacgtgacacgatttt 5396310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 8689082 - 8689116
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  8689082 cgtgacacgattttgggaaaacgtgacacgatttt 8689116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 484
Target Start/End: Original strand, 24917391 - 24917535
Alignment:
Q  341 gatacttcacagatactctcggatacgtat--cctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatattt 438  Q
    |||||| |||| |||||| ||||||||| |  || |||||| || ||  |||||  |||||||| ||||||| ||| |||| |||||||||  |||| |     
T  24917391 gatactccacatatactcgcggatacgtgtacccacgaagtatcagaagtaaatgttttaatttataaaaaa-attctacctgatacttattggatactc 24917489  T
Q  439 catagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    | ||||||||| |  |||||||||||||| |||||| |||||||||    
T  24917490 cgtagatacacaaggatacttataagatatttcacagatacgtatc 24917535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 26363737 - 26363771
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  26363737 cgtgacacgattttgggaaaacgtgacacgatttt 26363771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 27417647 - 27417613
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  27417647 cgtgacacgattttgggaaaacgtgacacgatttt 27417613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 508
Target Start/End: Original strand, 27675411 - 27675460
Alignment:
Q  458 ttataagatacttcacatatacgtatcataggacaaaaaatgaagggtaaa 508  Q
    |||||||| |||||||||||||||||| || || |||||||||||||||||    
T  27675411 ttataagacacttcacatatacgtatccta-gaaaaaaaatgaagggtaaa 27675460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 34570892 - 34570858
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  34570892 cgtgacacgattttgggaaaacgtgacacgatttt 34570858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 52095839 - 52095805
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  52095839 cgtgacacgattttgggaaaacgtgacacgatttt 52095805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 54867690 - 54867656
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||| ||||||||||||||||||||||||||    
T  54867690 cgtgtcacaattttgggaaaacgtgacacgatttt 54867656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 54882512 - 54882546
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  54882512 cgtgacacgattttgggaaaacgtgacacgatttt 54882546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 565
Target Start/End: Original strand, 16622879 - 16622912
Alignment:
Q  532 gtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||| ||||||||||||||||||||||||||    
T  16622879 gtgtcacaattttgggaaaacgtgacacgatttt 16622912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 429
Target Start/End: Original strand, 45773863 - 45773956
Alignment:
Q  336 atatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttat 429  Q
    ||||||||||||||| ||||||  ||||||||||||   ||||| ||  | |||| || |||||||| ||| |||||||||| | |||||||||    
T  45773863 atatcgatacttcacggatacttgcggatacgtatctatgaagtatcgaaattaattattttaatttttaataaatattttatcggatacttat 45773956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 440
Target Start/End: Original strand, 6255272 - 6255352
Alignment:
Q  360 cggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttca 440  Q
    ||||||||||||| || ||| || || |||| || ||||||||  || | || ||||||| ||||||||||||||||||||    
T  6255272 cggatacgtatccacggagtatcagaattaattattttaattttaaatatattttttaccggatacttataagatatttca 6255352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 484
Target Start/End: Complemental strand, 15477002 - 15476870
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 451  Q
    ||||||| ||||||||||    |||||| || || |||| || |||||||| ||| |||| ||||| ||||||||| |  |||| | || |||||||| |    
T  15477002 gatactcgcggatacgtactgacgaagtatcggaattaactattttaatttttaataaatgttttatcagatacttgtgtgatactccacagatacacaa 15476903  T
Q  452 taatacttataagatacttcacatatacgtatc 484  Q
      |||||| |||||||||||| | |||||||||    
T  15476902 ggatacttctaagatacttcaaagatacgtatc 15476870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Complemental strand, 34570799 - 34570764
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34570799 aacgtgtcacgattt-gggaaaacgtgacacgatttt 34570764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 293 - 484
Target Start/End: Original strand, 7710 - 7901
Alignment:
Q  293 gatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaat 392  Q
    |||||| ||||||||| ||||| ||||||| ||||||||| | ||| |||||||  || ||||||| ||||||||||||| |||||| || || |||| |    
T  7710 gatacttcaaaacggagacgtatccgtatcggatacgtatcagataccgatactctacggatactcgcggatacgtatccacgaagtatcggaattaatt 7809  T
Q  393 aatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    | |||||||| ||| |||||||||| |  ||||||||  |||| | || |||||||| |  |||||| |||||||||||||| | |||||||    
T  7810 attttaatttttaataaatattttatcgaatacttatgtgatactccacagatacacaaggatacttctaagatacttcacagacacgtatc 7901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 280 - 484
Target Start/End: Complemental strand, 27164355 - 27164151
Alignment:
Q  280 cctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagt 379  Q
    ||||| ||||| ||||||| |||||  || |||||||||||||||||| |||||  |||| || |||| || |||| ||  |||||||||    | ||||    
T  27164355 cctatgaagtctggatacttcaaaatagagacgtacccgtatcagatatgtatttgatattgacactttacggatattcgtggatacgtacttacaaagt 27164256  T
Q  380 gtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatac 479  Q
     || || |||| || ||  |||| ||||| |||||||| | |||||||||  |||| | ||||||||||| |  ||||||||||||||||||||||||||    
T  27164255 atcggaattaattatttacatttttaaaatatattttatctgatacttattggatactccatagatacacaaggatacttataagatacttcacatatac 27164156  T
Q  480 gtatc 484  Q
    |||||    
T  27164155 gtatc 27164151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 319 - 508
Target Start/End: Complemental strand, 24611751 - 24611563
Alignment:
Q  319 tatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttac 418  Q
    |||||||||||||||  ||| ||||||| |||| |||||| ||||||||||| | || ||| || || |||| || ||||||||  || | ||||||||     
T  24611751 tatcagatacgtattggataccgatactccacatatactcgcggatacgtattcacggagtatcagaattaattattttaatttaaaatacatattttat 24611652  T
Q  419 cagatacttataagatatttcatagatacaccata-atacttataagatacttcacatatacgtatcataggacaaaaaatgaagggtaaa 508  Q
    | ||||||||||||||| |  | | ||||| |||| |||||| || |||||| |||| | ||||||| | ||| |||||||||||||||||    
T  24611651 cggatacttataagatactcgacaaataca-catagatacttgtacgatactacacagagacgtatcctggga-aaaaaatgaagggtaaa 24611563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 508
Target Start/End: Complemental strand, 39615224 - 39615141
Alignment:
Q  422 atacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatcataggacaaaaaatgaagggtaaa 508  Q
    |||||| ||||||| | || |||||||| || ||||||||||||||||||||| ||||||||| |||   |||| ||||||||||||    
T  39615224 atacttgtaagatactccacagatacacaatgatacttataagatacttcacaaatacgtatcttag---aaaagatgaagggtaaa 39615141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 487
Target Start/End: Original strand, 2118611 - 2118702
Alignment:
Q  396 ttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatcata 487  Q
    ||||||| |||||||||| ||| |||||||||||| |||| || | |||||||| | ||||||||||| ||| | |||| |||| |||||||    
T  2118611 ttaatttttaaaaaatatcttatcagatacttataggatactttagagatacacaagaatacttataaaataatgcacaaatacatatcata 2118702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 8370064 - 8370098
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  8370064 cgtgtcacgattttgggaaaacgtgacacgatttt 8370098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 16264860 - 16264826
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  16264860 cgtgtcacgattttgggaaaacgtgacacgatttt 16264826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 27027218 - 27027184
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  27027218 cgtgtcacgattttgggaaaacgtgacacgatttt 27027184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 40592357 - 40592391
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  40592357 cgtgtcacgattttgggaaaacgtgacacgatttt 40592391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 40734186 - 40734220
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  40734186 cgtgtcacgattttgggaaaacgtgacacgatttt 40734220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 40735117 - 40735151
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||||||||||||||||||||    
T  40735117 cgtgtcacgattttgggaaaacgtgacacgatttt 40735151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 484
Target Start/End: Complemental strand, 20369459 - 20369370
Alignment:
Q  395 tttaatttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatc 484  Q
    |||| ||| |||||||||||||| | ||||||| || | || |||| |||||||| |  |||||||||||||| ||||||||||| ||||    
T  20369459 tttattttttaaaaaatattttatccgatacttttagggtacttcacagatacacaaggatacttataagatatttcacatatacatatc 20369370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 508
Target Start/End: Complemental strand, 31489823 - 31489628
Alignment:
Q  301 aaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtgtctgacttaaataatttaat 400  Q
    |||| ||| |||||||||||| |||||||||| | ||| | ||| ||||  ||||||||||||||||||  |||||| |        ||| || ||||||    
T  31489823 aaaatggagacgtacccgtattagatacgtatcagataccaatatttcatggatactctcggatacgta--ctcgaaat--------taattattttaat 31489734  T
Q  401 ttctaaaaaatattttaccagatacttataagatatttcatagatacaccataatacttataagatacttcacatatacgtatcataggacaaaaaatga 500  Q
    ||  || | |||||||| || ||||||||||||||||| | ||||||||   ||||||| |||||||| ||||||| || |||| |  |  |||||||||    
T  31489733 ttaaaatatatattttatcatatacttataagatattttacagatacacacaaatacttgtaagatacgtcacatagacatatcct--gcaaaaaaatga 31489636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 474
Target Start/End: Complemental strand, 7629451 - 7629329
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 451  Q
    ||||||| | ||||||||||| |||||| || || |||| || |||||||| ||| |||||||||| | ||||||| |  |||| | || | |||||| |    
T  7629451 gatactcgcagatacgtatccacgaagtatcagaattaattattttaatttttaataaatattttatcggatacttgtgtgatactccacatatacacaa 7629352  T
Q  452 taatacttataagatacttcaca 474  Q
      |||||| ||||||||||||||    
T  7629351 ggatacttctaagatacttcaca 7629329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 7764141 - 7764175
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  7764141 cgtgacacgattttgggaaaacgtgacacgatttt 7764175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 435
Target Start/End: Complemental strand, 12176813 - 12176659
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 380  Q
    |||| ||| |||||||| |||||| ||| |||||||| ||   ||||||||| | ||   |||||| | | |||||||||||||||||| || || |||     
T  12176813 ctatgaagcccggataccccaaaatggagacgtacccatactggatacgtatcagattctgatactccgcggatactctcggatacgtacccacggagta 12176714  T
Q  381 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagata 435  Q
    || || |||| || ||||||||  || | |||||||| | |||||||||||||||    
T  12176713 tcggaattaattattttaatttaaaatatatattttatcggatacttataagata 12176659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 21711713 - 21711679
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||||||||||| |||||    
T  21711713 cgtgtcacgattttgggaaaacgtgacacaatttt 21711679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 29812753 - 29812787
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  29812753 cgtgacacgattttgggaaaacgtgacacgatttt 29812787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 36029605 - 36029571
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||| ||||||||||||||||||    
T  36029605 cgtgtcacgattttggaaaaacgtgacacgatttt 36029571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 39032130 - 39032164
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||| |||||||||||||    
T  39032130 cgtgtcacgattttgggaaaatgtgacacgatttt 39032164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 48438727 - 48438693
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||| |||||||||||||||||    
T  48438727 cgtgtcacgattttggggaaacgtgacacgatttt 48438693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 565
Target Start/End: Original strand, 1735884 - 1735913
Alignment:
Q  536 cacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||||||||||||    
T  1735884 cacgattttgggaaaacgtgacacgatttt 1735913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 565
Target Start/End: Complemental strand, 6096291 - 6096262
Alignment:
Q  536 cacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||||||||||||    
T  6096291 cacgattttgggaaaacgtgacacgatttt 6096262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 17064133 - 17064096
Alignment:
Q  291 cggatactccaaaacggaaacgtacccgtatcagatac 328  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  17064133 cggatactccaaaacggagacgtacccgtatcggatac 17064096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 434
Target Start/End: Complemental strand, 36172264 - 36172112
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatacgtattaaatatcgatacttcacagatactctcggatacgtatcctcgaagtg 380  Q
    |||| ||| |||||||| |||||| ||| ||||||| |||  ||||||||||   ||| ||||||| |   |||||||||||||||||| || || |||     
T  36172264 ctatgaagcccggatac-ccaaaatggagacgtacctgtactagatacgtatcggataccgatactccgtggatactctcggatacgtacccacggagta 36172166  T
Q  381 tctgacttaaataatttaatttctaaaaaatattttaccagatacttataagat 434  Q
    || || |||| || ||||||||  || | |||||||| | ||||||||||||||    
T  36172165 tcagaattaattattttaatttaaaatatatattttatcggatacttataagat 36172112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 533 - 565
Target Start/End: Complemental strand, 27038551 - 27038519
Alignment:
Q  533 tgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||| |||||||||||||    
T  27038551 tgtcacgattttgggaaaatgtgacacgatttt 27038519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Original strand, 29810651 - 29810686
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||| |||||||||||||||||||||    
T  29810651 aacgtgtcacgattt-gggaaaacgtgacacgatttt 29810686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 472
Target Start/End: Original strand, 43471643 - 43471763
Alignment:
Q  352 gatactctcggatacgtatcctcgaagtgtctgacttaaataatttaatttctaaaaaatattttaccagatacttataagatatttcatagatacacca 451  Q
    ||||||||| |||||||| || || ||| || || |||| || ||||||||  || | |||||||| | ||||||||||||||| |  | ||||||||      
T  43471643 gatactctcagatacgtacccacggagtatcagaattaattattttaattttaaatatatattttatcggatacttataagatactcgacagatacacac 43471742  T
Q  452 taatacttataagatacttca 472  Q
      |||||||||||||||||||    
T  43471743 agatacttataagatacttca 43471763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 565
Target Start/End: Complemental strand, 46985928 - 46985892
Alignment:
Q  529 aacgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||||||||||||||||  ||||||||||||||||||    
T  46985928 aacgtgtcacgattttgtaaaaacgtgacacgatttt 46985892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 5969 - 6016
Alignment:
Q  281 ctatcaagtccggatactccaaaacggaaacgtacccgtatcagatac 328  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  5969 ctatgaagtctggatacttcaaaacggagacgtacccgtatcagatac 6016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 17742 - 17708
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    |||| ||||||||||||||||||||||||||||||    
T  17742 cgtgacacgattttgggaaaacgtgacacgatttt 17708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Complemental strand, 3005 - 2971
Alignment:
Q  531 cgtgtcacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||||||||| |||||||    
T  3005 cgtgtcacgattttgggaaaacgtgacccgatttt 2971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 565
Target Start/End: Complemental strand, 20888 - 20859
Alignment:
Q  536 cacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||||||||||||    
T  20888 cacgattttgggaaaacgtgacacgatttt 20859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 565
Target Start/End: Complemental strand, 86095 - 86066
Alignment:
Q  536 cacgattttgggaaaacgtgacacgatttt 565  Q
    ||||||||||||||||||||||||||||||    
T  86095 cacgattttgggaaaacgtgacacgatttt 86066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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