View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_14 (Length: 472)
Name: NF7699_low_14
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 260 - 456
Target Start/End: Original strand, 40576000 - 40576196
Alignment:
| Q |
260 |
ctgaagcatgagctaggttgatcgacaatacccttcttatatcaactttttcacgaatattgaaaagtcctcctctaaatgctgtatcatctcattcctt |
359 |
Q |
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| T |
40576000 |
ctgaagcatgagctaggttgatcggcaatacccttcttatatcaactttttcacgaatattgaaaagtcttcctctaaatgctgtatcatctcattcctt |
40576099 |
T |
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| Q |
360 |
ggtgcatgaagaaaagtaagaaaattcaagtaaaagttaccttgaaagtcatatttaattagggcctgaaaggtagacaaattgttagccattaagg |
456 |
Q |
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| T |
40576100 |
ggtgcatgaagaaaagtaagaaaattcaagtgaaagttaccttgaaagtcatatttaattagtctgtgaaaggtagacaaattgtcagccattaagg |
40576196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 410 - 456
Target Start/End: Original strand, 40568994 - 40569040
Alignment:
| Q |
410 |
atatttaattagggcctgaaaggtagacaaattgttagccattaagg |
456 |
Q |
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| T |
40568994 |
atatttaattagggcgtgaaaggtagacaaattgttagccgttaagg |
40569040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 201
Target Start/End: Original strand, 40575974 - 40576005
Alignment:
| Q |
170 |
caatctggtgtatatcaacacttgagctgaag |
201 |
Q |
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| T |
40575974 |
caatctggtgtatatcaacacttgagctgaag |
40576005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 19952854 - 19952947
Alignment:
| Q |
5 |
taatactagtttttatgagatatgatttatgt----attacctgctatgcttgttttatttatctattgtaatactggcactactgtcacatat |
94 |
Q |
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| T |
19952854 |
taatgctagtttttatgagagatgatttatgtttttattttctgctatgcttgtgttatttatctatagtagtattggcatgactgtcacatat |
19952947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 19953050 - 19953118
Alignment:
| Q |
127 |
aatcatgaagttaatctaatgttaccaactttggaatgaaagccaatctggtgtatatcaacacttgagc |
196 |
Q |
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| T |
19953050 |
aatcatgatgtgaatctaatgttagtaattttggaatgaaatc-aatctggtgtatatcaacactagagc |
19953118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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