View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_15 (Length: 458)
Name: NF7699_low_15
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 26977054 - 26976609
Alignment:
| Q |
1 |
tattatcctccgcttttgtcattgttgggtgtacatagatcacatctcttatatctcttatataatcttcatttaccagttat----gagtcttgcacat |
96 |
Q |
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| T |
26977054 |
tattatcctccgcttttgtcattgttgagtgtacatagatcacatctcttatatctcttatataatcttcatttactagttatctatgagtcttgcacat |
26976955 |
T |
|
| Q |
97 |
cattatacttgcatcatcaataccatccaacaaagcacgccaccttactccactaccagaaagacttttgatgcaagaacccatctcattcttccatcaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26976954 |
cattatacttgcatcatcaataccatccaacaaagcacgccaccttactccactaccagaaagacttttgatgcaagaacccatctcattctcccatcaa |
26976855 |
T |
|
| Q |
197 |
gttaacacggccgaaataccacttgttggagagtccgtaaagaatagggagcaacaacaaaagactaaaacaccacatttccacaccttagaacattaga |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26976854 |
gttaacacggccgaaataccacttgttggagagtccgtaaagaatagggagcaacagcaaaagactaaaacaccacatttccacaccttagaacattaga |
26976755 |
T |
|
| Q |
297 |
catatgagtcacctctcttctatatcattaatttagctcattatcagccaatgtggaactaaacactcaaagttgaatgccaactatcagtttacaaata |
396 |
Q |
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| T |
26976754 |
catatgagtcgcctctcttctatatcattaatttagctcattatcagccaatgtgggactaaacactcaaagttgaatgccaactatcagtttacaaata |
26976655 |
T |
|
| Q |
397 |
gatattcatcaatattttctatccaataagaaaagaggaataaaaa |
442 |
Q |
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| T |
26976654 |
gatattcatcaatattttctatccaataagaaaagaggaataaaaa |
26976609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 249 - 423
Target Start/End: Original strand, 27005419 - 27005598
Alignment:
| Q |
249 |
aacaacaaaagactaaaacaccacatttccac-----accttagaacattagacatatgagtcacctctcttctatatcattaatttagctcattatcag |
343 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||| ||| |||||||||||||||||| |||||| |||| ||| |
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| T |
27005419 |
aacaacaaaagactgaaacaccacatttccaccaaaaaccttagagcattacccatatgaatcatctctcttctatatcattagtttagcccattctcaa |
27005518 |
T |
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| Q |
344 |
ccaatgtggaactaaacactcaaagttgaatgccaactatcagtttacaaatagatattcatcaatattttctatccaat |
423 |
Q |
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| | |||| ||||| |||||| | |||||| | | ||| | ||| |||||| ||||||||||||||||||| |||||| |
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| T |
27005519 |
ctagtgtgagactaaccactcacatttgaatacaagctacccgttcacaaatgcatattcatcaatattttctttccaat |
27005598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27005136 - 27005173
Alignment:
| Q |
1 |
tattatcctccgcttttgtcattgttgggtgtacatag |
38 |
Q |
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||||||||||||||| ||||||||||||||||| |||| |
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| T |
27005136 |
tattatcctccgcttctgtcattgttgggtgtatatag |
27005173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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