View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_16 (Length: 451)
Name: NF7699_low_16
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 434
Target Start/End: Complemental strand, 7038353 - 7037913
Alignment:
| Q |
10 |
cgtgttgaatccactcagacttttcaccttggtgctatcttagaaatcgcatgccctcctctgtccttggtgaccaagtctcccactcagtaatttttgc |
109 |
Q |
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| T |
7038353 |
cgtgttgaatccactcagacttttcaccttggtactatcttataaatcgcatgccctcctctgtccttggtgaccaagtctcccactcagtaatatttgc |
7038254 |
T |
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| Q |
110 |
taatactttgttacactctcttcccgatgttctttgggtccaaatgttttgtttgtagtatctgtcatagtctttgaaaaattgttggtttggtaactca |
209 |
Q |
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| T |
7038253 |
taatactttgttacactctctttccgatgttctttgggtccaaatgttttgtttgtagtatttgtcatagtctttgaaaaattgttggtttgataactca |
7038154 |
T |
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| Q |
210 |
tgtgtgtctaaatgattaaataaataacattatc----------tattttatggtcttatcaatgacatgtcatnnnnnnnngtgatttgaaatacgaaa |
299 |
Q |
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| T |
7038153 |
cgtgtgtctaaatgattaaataaataacattatcaatgtaatgatattttatggtcttatcaatgacatgtcataaaaaaaagtgatttgaaatacgaaa |
7038054 |
T |
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| Q |
300 |
catgaaattttgtatnnnnnnntggctaatattgaaaacatgatatttagaaggacacaaattgaaga------annnnnnnnngacaaattcttatcca |
393 |
Q |
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| T |
7038053 |
catgaaattttgtataaaaaaatggctaatattgaaaacatgatatttagaaggacacaaattgaagatttttttttttttttttacgaattcttatcca |
7037954 |
T |
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| Q |
394 |
ccgactccaatggcgtatgtgaatcccctcttctttgaaat |
434 |
Q |
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| T |
7037953 |
ccgactccaatggcgtatgtgaatcccctcttctctgaaat |
7037913 |
T |
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