View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_17 (Length: 433)
Name: NF7699_low_17
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 48236735 - 48236418
Alignment:
| Q |
13 |
gagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattg |
112 |
Q |
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| T |
48236735 |
gagatgaaggctaggaaagaggcagaagagaggaataaagtattgaatgcattggctcaaaatgataatcgatatagaaaatacactatgatggagattg |
48236636 |
T |
|
| Q |
113 |
aagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236635 |
aagttgctaccgagagattctcaccatcaaagaaactaggtgaaggtggatacggacctgtgtttaaaggtcaccttcatcacacaccagttgcagtcaa |
48236536 |
T |
|
| Q |
213 |
actcttaaatcctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgtatcaacattttttctttgtaccctaaatattaaccattt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48236535 |
actcttaaatcctgaagctgctcaaggcaggaagcaattcaaccaagaggtaatcatatgcatcaacattttttctttgtaccctaaatattaaccattt |
48236436 |
T |
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| Q |
313 |
aataatgcaaattttccc |
330 |
Q |
| |
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|||||||||||||||||| |
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| T |
48236435 |
aataatgcaaattttccc |
48236418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 339 - 411
Target Start/End: Complemental strand, 48236390 - 48236318
Alignment:
| Q |
339 |
aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcgctgttatttcgggat |
411 |
Q |
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| T |
48236390 |
aatataacggttatagtggtgctatggcactataacatagcgaaatttgaacaaatcactgttatttcgggat |
48236318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 3685864 - 3685920
Alignment:
| Q |
138 |
atcaaagaaactaggtgaaggtggatatggacctgtgtttaaaggtcaccttcatca |
194 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
3685864 |
atcaatgaaaataggtgaaggtggatatggacctgtgtttaaaggtcaacttgatca |
3685920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 43283498 - 43283456
Alignment:
| Q |
359 |
gctatggcactataacatagcgaaatttgaacaaatcgctgtt |
401 |
Q |
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| T |
43283498 |
gctatagcactatagcatagcgtaatttgaacaaatcgctgtt |
43283456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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