View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_2 (Length: 754)
Name: NF7699_low_2
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 11 - 626
Target Start/End: Original strand, 33964382 - 33964996
Alignment:
| Q |
11 |
atggacatcaagataattatgcttcaaaaaatttaggtaagcgttacaagatctttgctcaannnnnnncccattccttaatttctaagagcatagaagg |
110 |
Q |
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| T |
33964382 |
atggacttcaagata-ttatgcttcaaaaattttaggtaagcgttacaagatctttgctcaatttttttcccattccttactttctaagagcatagaagg |
33964480 |
T |
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| Q |
111 |
tgtaccatcctactatatagctatccaaggcctaagaaaatgataagaactagatctagttaccaatgttccattcctcctcgtctgatgatgatcctac |
210 |
Q |
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| T |
33964481 |
tgtaccatcctactatatagctatccaaggcctaagaaaatgacaagaactagacctagttaccagtgttccattcctcctcgtctgatgatgatcctac |
33964580 |
T |
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| Q |
211 |
aaccaaatcgggtgacctcatcacaagagaggccgttctatccgtagcatggaagaccggtccaaaaaacaaaccgtgttcatcataacaattgtattga |
310 |
Q |
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| T |
33964581 |
aaccaaatcgggtgacctcatcacaagagaagccgttctatccgtagcatggaagaccggtccaaaacacaaaccgtgttcatcataacaattgtattga |
33964680 |
T |
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| Q |
311 |
tcaggaaaatgcccttcatttgaaatgacctcctctactgtatccttatagattaagatggttttgataatgtgtcaactgctccctcagttttgagttt |
410 |
Q |
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| T |
33964681 |
ttaggaaaatgcccttaatttgaaatgacctcctctactgtatccttatagattaggatggttttgataatgtgtcaactgctccctcagttttgagttt |
33964780 |
T |
|
| Q |
411 |
gttgaaaatgtgtgttcttacatcaaaaaccattagagagaaatgattgaaatattttagagagaagggctgctaattttaagctatagaatgaaagaat |
510 |
Q |
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| T |
33964781 |
gttgaaaatgtgtgttcttacatcaaaaaccattagagagaaatgattgaaatattttagagagaagggctgctaattttaagctatagaatgaaagaat |
33964880 |
T |
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| Q |
511 |
ggtaggagttaagtgtggtttaagtttttgagagaaaaatatgatcatataaaaacgagtattagataggagaatggttaaatttgagtttgaaataatt |
610 |
Q |
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| T |
33964881 |
ggtaggagttaagtgtggtttatgtttttcagagaaaaatatgatcatataaaaacgagtattagataggaaaatggttaaatttgagtttgaaataatt |
33964980 |
T |
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| Q |
611 |
ttctttgtatgattgg |
626 |
Q |
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| T |
33964981 |
ttctttgtatgattgg |
33964996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 642 - 735
Target Start/End: Original strand, 33967909 - 33968002
Alignment:
| Q |
642 |
cggtaatgttatttagatattgcattttttcaatcctaaacacggcagaacttaattaatttaacaaatctctttatctgttgatagtttgcaa |
735 |
Q |
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| T |
33967909 |
cggtaatgttatttagatattgcattttttcaatcctaaacacggcagaacttaattaatttagcaaatctctttatctgttgatagtttgcaa |
33968002 |
T |
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