View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_26 (Length: 342)
Name: NF7699_low_26
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_26 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 24014030 - 24013716
Alignment:
| Q |
17 |
aaaggtatcaaagttttatgaaacaatgaaataaaggtagcacatggaatacctcaagaaagagtgatgggcgaacatgaatttacaatcacacaataac |
116 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
24014030 |
aaaggtatcaaagttttatgaaacaatggaataaaggtagcacatggaatacctcaagaaagagtgatgggcgaatatgaatttacaatcacacgataac |
24013931 |
T |
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| Q |
117 |
acac--ttacaagggaggcaacaactcgtaaccttaggacataaatcgcatctgataacttannnnnnnattaatttatttgttttcttcatgtnnnnnn |
214 |
Q |
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|||| | ||||||||||||||||||||||||| |||| || |||||||||||||| ||||| ||| ||||||||||||||||||||| |
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| T |
24013930 |
acacattcacaagggaggcaacaactcgtaaccctagggcagaaatcgcatctgatcactta-ttttttatttatttatttgttttcttcatgtaaaaaa |
24013832 |
T |
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| Q |
215 |
ntcataaggaactcttggtcaatgttgttattctttgtatttaagatttactaagatgtgtgatattttaatcaggtagatttactcaatgcattttaga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24013831 |
atcataaggaactcttggtcaatgttgttattctttgcatttaagatttactaagatgtgtgatattttaatcaggtagatttactaaatgcattttaga |
24013732 |
T |
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| Q |
315 |
aatttagatttcatct |
330 |
Q |
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|||||||||||||||| |
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| T |
24013731 |
aatttagatttcatct |
24013716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 92899 - 92572
Alignment:
| Q |
1 |
accgcggtaataacacaaaggtatcaaagttttatgaaacaatgaaataaaggtagcacatggaatacctcaagaaagagtgatgggcgaacatgaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
92899 |
accgcggtaataacacaaaggtatcaaagttttatgaaacaatggaataaaggtcgcgcatggaataactcaagaaagagtgatgggcgaacatgaattt |
92800 |
T |
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| Q |
101 |
acaatcacacaataacacacttacaagggaggcaacaactcgtaaccttaggacataaatcgcatctgataacttannnnnnnattaatttatttgtttt |
200 |
Q |
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|||||||||| |||||||||| | |||||||||| |||||||||||||||||| | |||||||||||||| || || ||| ||||||||||||| |
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| T |
92799 |
acaatcacacgataacacactcataagggaggcagcaactcgtaaccttaggagagaaatcgcatctgatcacgtatttatttatttatttatttgtttt |
92700 |
T |
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| Q |
201 |
cttcatgtnnnnnnntcataaggaactcttggtcaatgttgttatt-ctttgtatttaagatttactaagatgtgtgatattttaatcaggtagatttac |
299 |
Q |
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|||||||| ||||||| | |||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
92699 |
cttcatgtaaaaaaatcataagaatctctaggtcaatgttgttattgctttatatttaagatttactaagatgtgtgatattttaatcaagtagatttac |
92600 |
T |
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| Q |
300 |
tca----atgcattttagaaatttagat |
323 |
Q |
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| | ||||||||||||||||||||| |
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| T |
92599 |
taaggagatgcattttagaaatttagat |
92572 |
T |
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