View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_28 (Length: 317)
Name: NF7699_low_28
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 27175971 - 27175733
Alignment:
| Q |
6 |
tgtacaaatatcatttctcctttcttatcaagtac-cttatatgacatgtcaggattgtttgcttgaaatcaaacatactcgttttacaatatgaattta |
104 |
Q |
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| T |
27175971 |
tgtacaaatatcatttctcctttcttatcaagtactcttacatcacatgtcaggattgtttgcttgaaatcaaacat----gttttacaatatgaattta |
27175876 |
T |
|
| Q |
105 |
gagaataaagaatatggaaactcaacattttgtgaatagtaaaattgaacggaagaagtgagcg-cacaa--tatattgatccacattgtgtgtatatag |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||| |
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| T |
27175875 |
gagaataaagaatatggaaactcaacattttgtgaatagtaaaattgaacggaagaagtgagtgttacaatgtgtattgatccacattgtgtgtatatag |
27175776 |
T |
|
| Q |
202 |
tttgctaacttaaaccaacctaaaaacatgaaggtctaagtta |
244 |
Q |
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| T |
27175775 |
tttgctaatttaaaccaacctaaaatcatgaaggtttaagtta |
27175733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 27175706 - 27175630
Alignment:
| Q |
223 |
aaaaacatgaaggtctaagttaacaactttgaactctttcaccaaaatcttattgcttcttctaattggaacatcct |
299 |
Q |
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| T |
27175706 |
aaaaatatgaaggtctaagttaacaactttgaactctttcaccaaaatcttattgcttcttctaattggaacatcct |
27175630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 607816 - 607775
Alignment:
| Q |
201 |
gtttgctaacttaaaccaacctaaaaacatgaaggtctaagt |
242 |
Q |
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| T |
607816 |
gtttgctaacttagatcaacctaaaaatatgaaggtctaagt |
607775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 33330439 - 33330390
Alignment:
| Q |
249 |
ctttgaactctttcaccaaaatcttattgcttcttctaattggaacatcc |
298 |
Q |
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| T |
33330439 |
ctttgaactctttcaccaagatcttattgcttattctaattggaacatcc |
33330390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 48675812 - 48675778
Alignment:
| Q |
211 |
ttaaaccaacctaaaaacatgaaggtctaagttaa |
245 |
Q |
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| T |
48675812 |
ttaaaccaacataaaaacatgaaggtctaagttaa |
48675778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 16924957 - 16924915
Alignment:
| Q |
202 |
tttgctaacttaaaccaacctaaaaacatgaaggtctaagtta |
244 |
Q |
| |
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|||| ||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
16924957 |
tttgttaacttagaccaacctaaaaacataaaggtctaagtta |
16924915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 40383706 - 40383747
Alignment:
| Q |
203 |
ttgctaacttaaaccaacctaaaaacatgaaggtctaagtta |
244 |
Q |
| |
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||||||||||| |||||||||||||||| |||| |||||||| |
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| T |
40383706 |
ttgctaacttagaccaacctaaaaacattaaggactaagtta |
40383747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 39731015 - 39731055
Alignment:
| Q |
208 |
aacttaaaccaacctaaaaacatgaaggtctaagttaacaa |
248 |
Q |
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|||||| |||||| |||||||||||||||||||||||||| |
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| T |
39731015 |
aacttagaccaacaaaaaaacatgaaggtctaagttaacaa |
39731055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 40138741 - 40138783
Alignment:
| Q |
202 |
tttgctaacttaaaccaacctaaaaacatgaaggtctaagtta |
244 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||||||||| |
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| T |
40138741 |
tttgctaacttagaacaacctaaaaatatgaaggtctaagtta |
40138783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 30956539 - 30956587
Alignment:
| Q |
195 |
tatatagtttgctaacttaaaccaacctaaaaacatgaaggtctaagtta |
244 |
Q |
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| T |
30956539 |
tatatagtttgctaacttagaccaa-caaaaaacatgaaggtccaagtta |
30956587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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