View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7699_low_29 (Length: 280)

Name: NF7699_low_29
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7699_low_29
NF7699_low_29
[»] chr5 (4 HSPs)
chr5 (2-260)||(24137344-24137596)
chr5 (1-177)||(11320614-11320786)
chr5 (65-260)||(9512268-9512456)
chr5 (94-260)||(27315086-27315250)
[»] chr2 (8 HSPs)
chr2 (1-260)||(8986671-8986925)
chr2 (1-233)||(32290901-32291126)
chr2 (25-259)||(1172878-1173102)
chr2 (25-233)||(38583631-38583831)
chr2 (2-85)||(9047926-9048007)
chr2 (11-181)||(20593597-20593762)
chr2 (179-262)||(29409182-29409264)
chr2 (92-181)||(42633125-42633213)
[»] chr7 (12 HSPs)
chr7 (1-260)||(46963177-46963431)
chr7 (24-226)||(15614396-15614592)
chr7 (28-232)||(44338823-44339020)
chr7 (65-262)||(11828017-11828224)
chr7 (63-265)||(17921307-17921505)
chr7 (118-261)||(21814286-21814426)
chr7 (61-262)||(3902045-3902241)
chr7 (61-181)||(3889553-3889672)
chr7 (131-197)||(26403374-26403438)
chr7 (118-197)||(24486651-24486728)
chr7 (61-181)||(3890003-3890122)
chr7 (61-123)||(3889296-3889357)
[»] chr4 (5 HSPs)
chr4 (1-260)||(16871395-16871649)
chr4 (92-255)||(54148109-54148268)
chr4 (66-259)||(24225860-24226049)
chr4 (115-162)||(7259055-7259102)
chr4 (179-260)||(24131728-24131809)
[»] chr1 (10 HSPs)
chr1 (1-172)||(15629549-15629720)
chr1 (61-262)||(2071641-2071840)
chr1 (61-262)||(2075171-2075370)
chr1 (61-260)||(3774429-3774625)
chr1 (61-259)||(11993432-11993624)
chr1 (101-197)||(10354203-10354296)
chr1 (1-106)||(9167991-9168092)
chr1 (179-246)||(9167904-9167970)
chr1 (122-168)||(29958913-29958959)
chr1 (93-142)||(370586-370634)
[»] chr6 (12 HSPs)
chr6 (61-254)||(28063117-28063308)
chr6 (1-260)||(9290753-9291009)
chr6 (61-233)||(21862367-21862536)
chr6 (65-214)||(33424139-33424284)
chr6 (114-232)||(18984353-18984467)
chr6 (92-197)||(13098076-13098178)
chr6 (116-181)||(2131739-2131804)
chr6 (108-171)||(3900639-3900702)
chr6 (177-261)||(8701719-8701801)
chr6 (177-261)||(5986857-5986939)
chr6 (114-166)||(9365292-9365344)
chr6 (141-181)||(10741661-10741701)
[»] chr3 (11 HSPs)
chr3 (1-180)||(50296026-50296205)
chr3 (69-230)||(42531100-42531258)
chr3 (92-255)||(22820977-22821136)
chr3 (2-137)||(46691666-46691809)
chr3 (118-261)||(16462826-16462966)
chr3 (103-257)||(2593209-2593355)
chr3 (116-165)||(34338082-34338131)
chr3 (179-260)||(814500-814580)
chr3 (172-233)||(50297370-50297431)
chr3 (120-169)||(46573941-46573990)
chr3 (166-233)||(814167-814231)
[»] chr8 (7 HSPs)
chr8 (28-232)||(20242500-20242697)
chr8 (28-232)||(20250463-20250660)
chr8 (92-255)||(5616763-5616922)
chr8 (94-259)||(16578896-16579057)
chr8 (179-254)||(43615376-43615450)
chr8 (94-164)||(16583729-16583797)
chr8 (211-261)||(2098503-2098553)
[»] scaffold0007 (1 HSPs)
scaffold0007 (25-231)||(14395-14594)
[»] scaffold0499 (1 HSPs)
scaffold0499 (92-180)||(7045-7132)
[»] scaffold0018 (1 HSPs)
scaffold0018 (115-173)||(31956-32014)
[»] scaffold0025 (1 HSPs)
scaffold0025 (92-146)||(154713-154766)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 24137344 - 24137596
Alignment:
Q  2 tttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgattta 101  Q
    |||||||| ||||||||||||| |||||||||||||| || |||||||||||| |||||    |||||||||| |||||||| ||||  ||||||||||     
T  24137344 tttgattggttgatggtgatggttcttgctgctctctctatgaagataactcattttgg----ttgctgctcttcattggttctgctagcagctgatttg 24137439  T
Q  102 gtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttc 201  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||| |||    
T  24137440 gtttatttttctgggttaatttgtaacaagcttaaagcttagtaagctttagcttgaggggtagtgttagaactt--tatattatttagtatgttttttc 24137537  T
Q  202 gaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    | |||| | |||||||||||||||| ||||||  |||| |||  |||||||||||||||    
T  24137538 gtattttgtttgacaaactcacaatccttcttgttgattcattgtgagtttgagggtag 24137596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 11320786 - 11320614
Alignment:
Q  1 ctttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgattt 100  Q
    |||||| || |||||||||||||  |||| ||| |||| |  || |||||||||||||||||| |    |||||||| | ||| ||||  | ||||||||    
T  11320786 ctttgagtggttgatggtgatggtgcttgttgccctctctttgatgataactcactttggttgtt----gctctccactagttctgctagccgctgattt 11320691  T
Q  101 agtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaacttt 177  Q
      ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  11320690 gatttatttttttgggttaatttgtaacaagcttaaagcttagtaagcttcagcttgatgggtagtgttagaacttt 11320614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 260
Target Start/End: Original strand, 9512268 - 9512456
Alignment:
Q  65 ttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggta 164  Q
    |||||||||| |||||||| ||||   |||| |||| |||||||||   |||||||||||||||||||||||   | | ||||| || |||||| ||||     
T  9512268 ttgctgctcttcattggttatgctacgagctaatttggtttattttcg-gggttaatttgtaacaagcttaa---taattaagcatcagcttgatgggtt 9512363  T
Q  165 gtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    |||||||||||||||||  |||||||||||||| |||  |||| |  ||||||||||||||| ||||||  |||||||||||||||||||||||||    
T  9512364 gtgttagaactttatat--tatttagtatgttt-ttcatattttgtatgacaaactcacaatacttcttgttgatgcatcatgagtttgagggtag 9512456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 260
Target Start/End: Original strand, 27315086 - 27315250
Alignment:
Q  94 ctgatttagtttatttttatgggttaa-tttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagta 192  Q
    |||||||||||||||||| | || ||| ||||||||||||||||| ||||||||||||   ||||||||||||||||| |||||   |||||||||| ||    
T  27315086 ctgatttagtttattttttttggataaatttgtaacaagcttaaaacttagtaagctttaccttgaggggtagtgttaaaactt--catattatttaata 27315183  T
Q  193 tgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    | ||| || | |||| | |||||||||||  ||| ||||||  |||||||||||||||||||||||||    
T  27315184 tattt-ttggtattttgtttgacaaactcgtaatacttcttgttgatgcatcatgagtttgagggtag 27315250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 8986671 - 8986925
Alignment:
Q  1 ctttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgattt 100  Q
    ||||||||| ||||||||||||| ||||||||||||||  |  ||||||||| | ||||||| |||||||||||||||||| ||||||||||||||||||    
T  8986671 ctttgattggttgatggtgatggttcttgctgctctctaca--aagataactaagtttggtttgttgctgctctccattgggtttgctgacagctgattt 8986768  T
Q  101 agtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttctt 200  Q
     |||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||| ||    
T  8986769 ggtttatttttcttggttaatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttagaactt--tatattatttagtatgttt-tt 8986865  T
Q  201 cgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    || |||| |  ||||||||||| ||||||||||  |||  |||  |||||||||||||||    
T  8986866 cgtattttgtatgacaaactcagaatgcttcttgttgactcattgtgagtttgagggtag 8986925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 32290901 - 32291126
Alignment:
Q  1 ctttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgattt 100  Q
    ||||||||| |||||| |||||  |||||||||||||| || ||| |||||||||||| ||||    |||||||||| |||||| ||| ||||||||||     
T  32290901 ctttgattggttgatgatgatgattcttgctgctctctctacgaaaataactcactttagttg----ctgctctccaatggttt-gctaacagctgattc 32290995  T
Q  101 agtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttctt 200  Q
    ||||||||||| | |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||  ||||||||||||||||||| ||    
T  32290996 agtttatttttctaggttaattggtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttagatctt--tatattatttagtatgtttttt 32291093  T
Q  201 cgaatttagattgacaaactcacaatgcttctt 233  Q
    || |||| | |||||||||| ||||||||||||    
T  32291094 cgtattttgtttgacaaactaacaatgcttctt 32291126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 259
Target Start/End: Complemental strand, 1173102 - 1172878
Alignment:
Q  25 tcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttg 124  Q
    |||||||||||||| || ||||||||||||||||| |||    ||||||||||||||||||||| ||||||||||| ||| |||||| ||||||||||||    
T  1173102 tcttgctgctctctctacgaagataactcactttgattg----ctgctctccattggttttgctaacagctgatttggttgatttttctgggttaatttg 1173007  T
Q  125 taacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcaca 224  Q
    |||||| |||||||||  ||||||||| ||||||| |||||| ||||||||||||||| |||    ||||||| | || |||| | ||||||||||||||    
T  1173006 taacaaacttaaagctccgtaagcttcagcttgagaggtagtattagaactttatataatat----tatgttt-tccgtattttgtttgacaaactcaca 1172912  T
Q  225 atgcttctttgtgatgcatcatgagtttgagggta 259  Q
    ||| || ||  ||||||||||||| ||||| ||||    
T  1172911 atg-tttttgttgatgcatcatgaatttgaaggta 1172878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 38583831 - 38583631
Alignment:
Q  25 tcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgatttagtttatttttatggg-ttaattt 123  Q
    |||||||||||||| |  |||||||||||||||||||||    |||||||  ||||||| | ||  |||||||||| |||||||||| | || |||||||    
T  38583831 tcttgctgctctctctgtgaagataactcactttggttg----ctgctcttaattggttcttctaccagctgatttggtttattttttttggattaattt 38583736  T
Q  124 gtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcac 223  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||| ||||||||||  || | |||| ||||| ||||  |||    
T  38583735 gtaacaag-ttaaagcttagtaagcttcagcttgaggggtagtgttagaacttt--atattacttagtatgtt--tttgtattttgattggcaaatccac 38583641  T
Q  224 aatgcttctt 233  Q
    ||||||||||    
T  38583640 aatgcttctt 38583631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 9048007 - 9047926
Alignment:
Q  2 tttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggtttt 85  Q
    |||||||| ||||||||||||| |  |||||||||||  | |||||||||||||||||||||||||||||| | ||||||||||    
T  9048007 tttgattggttgatggtgatggtttatgctgctctct--acgaagataactcactttggttggttgctgcttttcattggtttt 9047926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 20593762 - 20593597
Alignment:
Q  11 ttgatggtgatggctcttgctg--ctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgatttagtttatt 108  Q
    ||||||||||||| |||| |||  |||||| || || ||||||||||||||||||    ||||||| | ||| || | ||  |||||||||| |||||||    
T  20593762 ttgatggtgatggttcttactggtctctctctatgatgataactcactttggttg----ctgctcttcgttgattctactatcagctgatttggtttatt 20593667  T
Q  109 tttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatat 181  Q
    ||| ||| ||||||||||||||||||||| |||||||| ||||  ||| ||||||||| ||||||||| ||||    
T  20593666 ttt-tggattaatttgtaacaagcttaaa-cttagtaaacttcaactttaggggtagt-ttagaacttcatat 20593597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 29409264 - 29409182
Alignment:
Q  179 tatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtaggt 262  Q
    |||||| |||||||||||| |||  |||| | ||||||| |||||| |||||| |  |||||||||||||||||||||||||||    
T  29409264 tatattgtttagtatgttt-ttcatattttgtttgacaagctcacagtgcttcgtgttgatgcatcatgagtttgagggtaggt 29409182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 42633213 - 42633125
Alignment:
Q  92 agctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatat 181  Q
    ||||||||||||||||||| | |||||||||| ||| || || |||| |||||||||||   ||||||| ||||||||| || |||||||    
T  42633213 agctgatttagtttattttca-gggttaatttataataaactaaaagtttagtaagctttaacttgaggtgtagtgttaaaagtttatat 42633125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 8e-70; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 46963431 - 46963177
Alignment:
Q  1 ctttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgattt 100  Q
    ||||||||| ||||||||||||| ||||||||||||||  |  ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||    
T  46963431 ctttgattggttgatggtgatggttcttgctgctctctaca--aagataactaagtttggtttgttgctgctctccattggttttgctgacagctgattt 46963334  T
Q  101 agtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttctt 200  Q
     |||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||| ||    
T  46963333 ggtttatttttcttggttaatttgtaacaagtttaaagcttagtaagcttcagcttgaggggtagtgttagaacttt--atattatttagtatgttt-tt 46963237  T
Q  201 cgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    || || | |  ||||||||||| ||||||||||  |||  |||  |||||||||||||||    
T  46963236 cgtatattgtctgacaaactcagaatgcttcttgttgactcattgtgagtttgagggtag 46963177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 15614592 - 15614396
Alignment:
Q  24 ctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaattt 123  Q
    |||||| |||||||| || ||||||||||||||||||||| |    ||||||||||||||||||| ||| | ||||| |||||||||| |||||||||||    
T  15614592 ctcttgttgctctctctacgaagataactcactttggttgat----gctctccattggttttgctaacaacagatttggtttatttttctgggttaattt 15614497  T
Q  124 gtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcac 223  Q
     ||||||||||||| ||||||||||||| ||| |||||||||||| ||||||||  |||||||||||||||||| |||  |||| | |||||||||||||    
T  15614496 ttaacaagcttaaaacttagtaagcttcagctcgaggggtagtgtaagaacttt--atattatttagtatgttttttcatattttgtttgacaaactcac 15614399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 44338823 - 44339020
Alignment:
Q  28 tgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaa 127  Q
    ||||||||||| ||  |||||||||||||||||    |||||||||| |||||||| |||| ||||||||||| |||||||||| | | |||||||||||    
T  44338823 tgctgctctctctacaaagataactcactttgg----ttgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaa 44338918  T
Q  128 caagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatg 227  Q
     | |||||||||||||||||| ||  |||||||||| ||||| ||||||  ||||||| ||||||| ||| |||| |||| | |||||||||||||||||    
T  44338919 taggcttaaagcttagtaagcctcaacttgaggggtggtgtttgaactt--tatattacttagtatattt-ttcgtattttgtttgacaaactcacaatg 44339015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 262
Target Start/End: Complemental strand, 11828224 - 11828017
Alignment:
Q  65 ttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggta 164  Q
    |||||||||||||||||||  |||  ||  ||||||||||||||||| | |||||||||||||||||||||| ||||||||| ||||  |||||||||||    
T  11828224 ttgctgctctccattggttccgctatcaaatgatttagtttatttttctaggttaatttgtaacaagcttaaggcttagtaatcttcaacttgaggggta 11828125  T
Q  165 --gtgttagaactttatatattatttagtatg--------tttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttga 254  Q
      |||||||||||| ||||  |||||||||||        ||| || | |||| |||| ||||||||||||||||||||  ||||||||||||||||| |    
T  11828124 atgtgttagaacttcatattatatttagtatgtttttttttttttttgtattttgatttacaaactcacaatgcttcttgttgatgcatcatgagtttta 11828025  T
Q  255 gggtaggt 262  Q
    ||||||||    
T  11828024 gggtaggt 11828017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 63 - 265
Target Start/End: Complemental strand, 17921505 - 17921307
Alignment:
Q  63 ggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgagggg 162  Q
    |||||||||||||  |||||| || |  ||||| ||||  ||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  17921505 ggttgctgctctctgttggttctgttatcagctaatttgttttattttc-tgggttaatttgtaacaagcttaaagcttagtaagctttagcttgagggg 17921407  T
Q  163 tagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtaggt 262  Q
    || ||||  ||  || || |||||||||||||||| |||| |||| | |||||||||||||| || ||||   ||||||||||||||||| |||||||||    
T  17921406 tactgttcaaa--ttttaaattatttagtatgttt-ttcgtattttgtttgacaaactcacattgtttctggttgatgcatcatgagtttaagggtaggt 17921310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 21814286 - 21814426
Alignment:
Q  118 taatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaa 217  Q
    |||| |||||||| | |||||||| |||||  ||  ||||||||||||||||||||||||||||  |||||||||||||| |||  |||  | |||||||    
T  21814286 taatatgtaacaaacataaagcttggtaagactcaacttgaggggtagtgttagaactttatat--tatttagtatgttt-ttcatattctgtttgacaa 21814382  T
Q  218 actcacaatgcttctttgtgatgcatcatgagtttgagggtagg 261  Q
    ||||||||||||||||  || |||||||||||||||||||||||    
T  21814383 actcacaatgcttcttgttgttgcatcatgagtttgagggtagg 21814426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 262
Target Start/End: Original strand, 3902045 - 3902241
Alignment:
Q  61 ttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgagg 160  Q
    |||||||||||||| ||||||||||| |  |||||||| | |||||||||| | ||||||||||||||||| ||||||||||| ||||||  |||| | |    
T  3902045 ttggttgctgctcttcattggttttgatatcagctgatctggtttattttt-tcggttaatttgtaacaagtttaaagcttagcaagctttagcttaaag 3902143  T
Q  161 ggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    || |||||||||||||  ||||||||||| |||| || ||   ||||   || |||||||||||||  |||||  |||| |||||||||||| |||||||    
T  3902144 ggaagtgttagaactt--tatattatttaatatgattttt--tatttttttttacaaactcacaatatttcttgttgattcatcatgagtttcagggtag 3902239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 3889553 - 3889672
Alignment:
Q  61 ttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgagg 160  Q
    |||||||||||||| ||||||||||| |  | | |||||| |||||||||| ||||||||||||||| ||| ||||||||||| || |||  |||| | |    
T  3889553 ttggttgctgctcttcattggttttgatatcggttgatttggtttattttt-tgggttaatttgtaataagtttaaagcttagcaaactttagcttaaag 3889651  T
Q  161 ggtagtgttagaactttatat 181  Q
    || ||||||||||||||||||    
T  3889652 ggaagtgttagaactttatat 3889672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 26403374 - 26403438
Alignment:
Q  131 gcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgttt 197  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||  |||||||||||||||||||    
T  26403374 gcttaaagcttagtaaactttagcttgaggggtagtgttagaactt--tatattatttagtatgttt 26403438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 24486728 - 24486651
Alignment:
Q  118 taatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgttt 197  Q
    ||||||||||||| |||||||||||||||||||   ||| | |||||||||||||| ||  |||||||||||||||||||    
T  24486728 taatttgtaacaaacttaaagcttagtaagctttaacttcaagggtagtgttagaagtt--tatattatttagtatgttt 24486651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 3890003 - 3890122
Alignment:
Q  61 ttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgagg 160  Q
    ||||||| |||||| |||| |||||| |  ||  |||||| ||||||||||   ||||||||||||||||| ||||||||||||||||||  |||| | |    
T  3890003 ttggttgttgctcttcattagttttgatatcatttgatttggtttatttttt--ggttaatttgtaacaagtttaaagcttagtaagctttagcttaaag 3890100  T
Q  161 ggtag-tgttagaactttatat 181  Q
     |||| ||||||||||||||||    
T  3890101 tgtagttgttagaactttatat 3890122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 3889296 - 3889357
Alignment:
Q  61 ttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaattt 123  Q
    ||||||||| |||| ||||||||||| |  |||||||||| |||||||||| |||||||||||    
T  3889296 ttggttgctactcttcattggttttggtatcagctgatttggtttattttt-tgggttaattt 3889357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 16871395 - 16871649
Alignment:
Q  1 ctttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgattt 100  Q
    ||||||||| ||||||||||||| |||||||| |||||  |  ||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||    
T  16871395 ctttgattggttgatggtgatggttcttgctgttctctaca--aagataactaagtttggtttgttgctgctctccattggttttgctgacagctgattt 16871492  T
Q  101 agtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttctt 200  Q
     |||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||| ||    
T  16871493 ggtttatttttcttggttaatttgtaacaagtttaaagcttagtaagcttcagcttgaggggtagtgttagaactt--tatattatttagtatgttt-tt 16871589  T
Q  201 cgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    || |||| | |||||||||||| |||| |||||  |||  |||  |||||||||||||||    
T  16871590 cgtattttgtttgacaaactcagaatgtttcttgttgactcattgtgagtttgagggtag 16871649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 92 - 255
Target Start/End: Original strand, 54148109 - 54148268
Alignment:
Q  92 agctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagt 191  Q
    |||| |||| ||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||  ||||||||||| |    
T  54148109 agctaatttggtttatttttg-gggttaatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttaaaagtt--tatattatttact 54148205  T
Q  192 atgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgag 255  Q
    |||||| |||| |||| | |||||||||||||||||||||||  ||||||||||||||||||||    
T  54148206 atgttt-ttcgtattttgtttgacaaactcacaatgcttcttgttgatgcatcatgagtttgag 54148268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 259
Target Start/End: Original strand, 24225860 - 24226049
Alignment:
Q  66 tgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtag 165  Q
    ||||||||| ||||| || || |  |||||||||| |||||||||   || |||||||||||  ||||| || ||||||||||||   ||| ||||||||    
T  24225860 tgctgctcttcattgattatgttatcagctgatttggtttattttcgagg-ttaatttgtaatgagcttcaaacttagtaagctttaacttcaggggtag 24225958  T
Q  166 tgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggta 259  Q
    |||| ||| |||||||  |||||||||| ||| |||| |||| | ||||||||| ||||||| |||||  ||||||||||||||||||||||||    
T  24225959 tgttcgaagtttatat--tatttagtatattt-ttcgtattttgtttgacaaacccacaatgattcttgttgatgcatcatgagtttgagggta 24226049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 7259102 - 7259055
Alignment:
Q  115 ggttaatttgtaacaagcttaaagcttagtaagcttccgcttgagggg 162  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  7259102 ggttaatttgtaacaagcttaaaacttagtaagtttcagcttgagggg 7259055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 24131728 - 24131809
Alignment:
Q  179 tatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    |||||||||| |||||||| |||| |||| | |  ||||||||||||||||||||  |||| |||  |||||||||||||||    
T  24131728 tatattattttgtatgttttttcgtattttgttgaacaaactcacaatgcttcttgttgattcattgtgagtttgagggtag 24131809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 15629720 - 15629549
Alignment:
Q  1 ctttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgattt 100  Q
    ||||||||| |||||| |||||| |||||||||||||| |  |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  15629720 ctttgattggttgatgatgatggttcttgctgctctctctgcgaagataactcactttggttggttgctgttctccattggttttgctgacaactgattt 15629621  T
Q  101 agtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttaga 172  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15629620 agtttatttttctgagttaatttgtaacaagcttaaagcttagtaagcttcagcttgaggggtagtgttaga 15629549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 61 - 262
Target Start/End: Complemental strand, 2071840 - 2071641
Alignment:
Q  61 ttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaa-gcttagtaagcttccgcttgag 159  Q
    ||||||| ||||||||||| ||| ||||  || |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  |||||||    
T  2071840 ttggttgttgctctccatttgttatgctatcaactgatttagtttatttttatggtttaatttgtaacaagcttaaacgcttagtaagctttagcttgag 2071741  T
Q  160 gggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggta 259  Q
    ||||||||||| || ||  ||||||||||||||||||| |||| |||| | |||||||||||| ||||||||||  | |||||||||||||||||||| |    
T  2071740 gggtagtgttacaagtt--tatattatttagtatgttt-ttcgtattttgtttgacaaactcagaatgcttcttgttaatgcatcatgagtttgagggca 2071644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 61 - 262
Target Start/End: Complemental strand, 2075370 - 2075171
Alignment:
Q  61 ttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaa-gcttagtaagcttccgcttgag 159  Q
    ||||||| ||||||| ||| ||| ||||  || |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||  |||||||    
T  2075370 ttggttgttgctctctatttgttatgctatcaactgatttagtttatttttatggtttaatttgtaacaagcttaaacgcttagtaagctttagcttgag 2075271  T
Q  160 gggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggta 259  Q
    ||||||||||| || ||  ||||||||||||||||||| |||| |||| | |||||||||||| ||||||||||  | |||||||||||||||||||| |    
T  2075270 gggtagtgttacaagtt--tatattatttagtatgttt-ttcgtattttgtttgacaaactcagaatgcttcttgttaatgcatcatgagtttgagggca 2075174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 61 - 260
Target Start/End: Complemental strand, 3774625 - 3774429
Alignment:
Q  61 ttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgagg 160  Q
    ||||||| || |||||| | ||| ||||  ||| |||| | |||||||||| |||||||||||||||||||| |||||||||||||||||   |||||||    
T  3774625 ttggttgttgatctccactagttctgctatcagttgatatggtttatttttctgggttaatttgtaacaagcataaagcttagtaagctttaacttgagg 3774526  T
Q  161 ggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    |||| |||||||| ||  |||||| |||| ||||||| || | |||| | |||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  3774525 ggtaatgttagaagtt--tatattttttaatatgttt-ttggtattttgtttgacaaactcacaatgcttcttgttgatgaatcatgagtttgagggtag 3774429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 259
Target Start/End: Original strand, 11993432 - 11993624
Alignment:
Q  61 ttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgagg 160  Q
    ||||||| |||||| |||||||| ||||  |||||||||| |||||||||  | | ||||||| ||||||||||||| |||| |||||||   |||||||    
T  11993432 ttggttgatgctcttcattggttatgctatcagctgatttggtttattttctttg-ttaattt-taacaagcttaaatcttaataagctttaacttgagg 11993529  T
Q  161 ggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggta 259  Q
    ||||||||||||| |||||||  ||||||||||||||  ||| ||||   |||||||||||||||||||||||  ||||||||| ||||||||||||||    
T  11993530 ggtagtgttagaagtttatat--tatttagtatgttt--tcgtattttatttgacaaactcacaatgcttcttgttgatgcatcttgagtttgagggta 11993624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 10354203 - 10354296
Alignment:
Q  101 agtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgttt 197  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||||||  |||||| | |||||||||||||||  |||||||||||||||||||    
T  10354203 agtttattttt-tgggttaatttctaacaaacttaaagcttagtaagctttagcttgaagagtagtgttagaactt--tatattatttagtatgttt 10354296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 9168092 - 9167991
Alignment:
Q  1 ctttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgattt 100  Q
    |||||| || || |||||||||| ||||| |||||||| || |||||||||||||||||    ||||||||||||||||||||||||| ||| || ||||    
T  9168092 ctttgactggttaatggtgatggttcttgatgctctctctatgaagataactcactttg----gttgctgctctccattggttttgctaacaactaattt 9167997  T
Q  101 agttta 106  Q
     |||||    
T  9167996 tgttta 9167991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 9167970 - 9167904
Alignment:
Q  179 tatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcat 246  Q
    ||||||||||||| ||||| |||| ||||   |||||||||||||||||||||||  |||||||||||    
T  9167970 tatattatttagtttgttt-ttcgtattttatttgacaaactcacaatgcttcttgttgatgcatcat 9167904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 29958913 - 29958959
Alignment:
Q  122 ttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgt 168  Q
    |||||||| ||||||||||||||||||||  |||||||||| |||||    
T  29958913 ttgtaacaggcttaaagcttagtaagctttagcttgaggggaagtgt 29958959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 370586 - 370634
Alignment:
Q  93 gctgatttagtttatttttatgggttaatttgtaacaagcttaaagctta 142  Q
    |||||||| ||||||||||  ||||||||||| |||||||||||||||||    
T  370586 gctgatttggtttatttttc-gggttaatttgcaacaagcttaaagctta 370634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 61 - 254
Target Start/End: Complemental strand, 28063308 - 28063117
Alignment:
Q  61 ttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgagg 160  Q
    ||||||||||||||| ||||||| ||||  |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||  |||||||    
T  28063308 ttggttgctgctctctattggttatgctatcagctgatttggtttatttttctgggttaatttgtaacaagcttaaagcttagtaaacttcatcttgagg 28063209  T
Q  161 ggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttga 254  Q
    || ||||||||||||||  ||||||||||||||||||||||| |||| | || ||||| |||||||||||||||||||||||||||||||||||    
T  28063208 ggaagtgttagaacttt--atattatttagtatgtttcttcgtattttgtttaacaaaatcacaatgcttctttgtgatgcatcatgagtttga 28063117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 9291009 - 9290753
Alignment:
Q  1 ctttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgattt 100  Q
    ||||||||| |||||| |||||| ||||| || ||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||||    
T  9291009 ctttgattggttgatgatgatggttcttgttgatctctctacgaacataactcactttggttggttgcttctctccattggttttgctgatagttgattt 9290910  T
Q  101 agtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttctt 200  Q
     |||||||||| | ||||||||||||||||||||||||||| |||| |||| |||| ||| ||| ||||||||||||  ||||||||||||||| || ||    
T  9290909 ggtttatttttttaggttaatttgtaacaagcttaaagcttggtaaacttcagcttcaggagtaatgttagaacttt--atattatttagtatgctt-tt 9290813  T
Q  201 cgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    || |||| |    ||||||||||||||||||||  |||  |||  |||||||||||||||    
T  9290812 cgtattttgtcaaacaaactcacaatgcttcttgttgactcattgtgagtttgagggtag 9290753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 61 - 233
Target Start/End: Original strand, 21862367 - 21862536
Alignment:
Q  61 ttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgagg 160  Q
    ||||| ||| |||||||||||||||||| ||||||||||| |||||| ||| | |||||||||||||||||||||||| |||||| ||||| ||||||||    
T  21862367 ttggtcgctactctccattggttttgctaacagctgatttggtttatatttctaggttaatttgtaacaagcttaaagtttagtatgcttcagcttgagg 21862466  T
Q  161 ggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctt 233  Q
    || |||||||||||||  ||||||||||||||||||| |||| |||| | |||||||||||||||||||||||    
T  21862467 ggaagtgttagaactt--tatattatttagtatgttt-ttcgtattttgcttgacaaactcacaatgcttctt 21862536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 33424284 - 33424139
Alignment:
Q  65 ttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggta 164  Q
    |||| ||||| |||||||| ||||   |||| |||| |||||||||  ||| |||||||||||||| ||||||||||||||||||||  |||||||||||    
T  33424284 ttgccgctcttcattggttgtgctacgagctaatttggtttattttc-tggattaatttgtaacaaacttaaagcttagtaagcttcaacttgaggggta 33424186  T
Q  165 gtgttagaactttatatattatttagtatgtttcttcgaatttagattga 214  Q
    |||||||||||||  |||||||||||||||||| |||| |||| ||||||    
T  33424185 gtgttagaacttt--atattatttagtatgttt-ttcgtattttgattga 33424139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 232
Target Start/End: Original strand, 18984353 - 18984467
Alignment:
Q  114 gggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattg 213  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||||| |||||||||  || ||||||| ||||||  ||| |||| |||| | |||    
T  18984353 gggttaatttgtaacaagcttaaaccttagtaagctttagcttgaggggtggtgttagaa--ttttatattacttagta--ttttttcgtattttgtttg 18984448  T
Q  214 acaaactcacaatgcttct 232  Q
    |||||||||| ||||||||    
T  18984449 acaaactcacgatgcttct 18984467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 13098076 - 13098178
Alignment:
Q  92 agctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagt 191  Q
    ||||||||| ||||||||| | ||||||||||||||| |||||||| |||||||||| |  |||| |||||||||||||||| |||||| ||  ||||||    
T  13098076 agctgatttggtttattttca-gggttaatttgtaacgagcttaaaccttagtaagccttagcttaaggggtagtgttagaagtttatacat--tttagt 13098172  T
Q  192 atgttt 197  Q
    ||||||    
T  13098173 atgttt 13098178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 2131804 - 2131739
Alignment:
Q  116 gttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatat 181  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||||| | |||| | |||||||    
T  2131804 gttaatttgtaacaagcttaaagcttagtaagcttcaacttgaagggtaatattaggagtttatat 2131739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 3900639 - 3900702
Alignment:
Q  108 ttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttag 171  Q
    ||||| ||||||||| | |||||| ||||||||||||||||||  | |||||||||||||||||    
T  3900639 ttttaagggttaattcgcaacaagtttaaagcttagtaagctttggattgaggggtagtgttag 3900702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 8701719 - 8701801
Alignment:
Q  177 tatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtagg 261  Q
    ||||||||||||||||||||  || |  ||| | ||||||||||||||||||||| |||||||| ||||||||||| ||| ||||    
T  8701719 tatatattatttagtatgttgttt-gtgttttgtttgacaaactcacaatgcttc-ttgtgatgtatcatgagtttaaggatagg 8701801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 5986939 - 5986857
Alignment:
Q  177 tatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtagg 261  Q
    ||||||||||||| ||||||  |||| |||| | || |||||||||||||||||| || ||||| ||||||||||| ||| ||||    
T  5986939 tatatattatttaatatgttg-ttcgtattttgtttcacaaactcacaatgcttc-ttatgatgtatcatgagtttaaggatagg 5986857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 9365344 - 9365292
Alignment:
Q  114 gggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagt 166  Q
    |||||||||||||| ||| |||||| |||||||||||   |||||||||||||    
T  9365344 gggttaatttgtaataagtttaaagtttagtaagctttaacttgaggggtagt 9365292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 10741661 - 10741701
Alignment:
Q  141 tagtaagcttccgcttgaggggtagtgttagaactttatat 181  Q
    |||| |||||| ||||||||||||| |||||||||||||||    
T  10741661 tagtgagcttcagcttgaggggtagcgttagaactttatat 10741701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 50296026 - 50296205
Alignment:
Q  1 ctttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgattt 100  Q
    ||||||||| |||||| |||||| | |||||||||||| || |||||||||| | |||||||||||||| ||||| |||||||||| ||||| || ||||    
T  50296026 ctttgattggttgatgatgatggtttttgctgctctctctacgaagataactaagtttggttggttgctactctctattggttttggtgacaactaattt 50296125  T
Q  101 agtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttata 180  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||    
T  50296126 ggtttatttttatgggttaatttgtaacaagcctaaagcttagtaagcttcggcttgaggggtaatgttagaactttata 50296205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 42531100 - 42531258
Alignment:
Q  69 tgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgt 168  Q
    |||||||||||||||||||||||| ||||||| |||||||||| ||| ||||| | |||| || ||||||||||||||||||| | ||||||| ||||||    
T  42531100 tgctctccattggttttgctgacacctgatttggtttatttttctggattaatctataactagtttaaagcttagtaagcttcagtttgagggttagtgt 42531199  T
Q  169 tagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgctt 230  Q
    ||||||||  |||| |||||||||||||| |||  |||| | |||| |||||||||||||||    
T  42531200 tagaactt--tatactatttagtatgttt-ttcatattttgtttgaaaaactcacaatgctt 42531258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 255
Target Start/End: Complemental strand, 22821136 - 22820977
Alignment:
Q  92 agctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagt 191  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||  |||| ||||||||||||||||||||  |||||||||| |    
T  22821136 agctgatttggtttattttt-tgggttaatttgtaacaagtttaaagcttagtaggctttagctttaggggtagtgttagaacttt--atattatttaat 22821040  T
Q  192 atgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgag 255  Q
    || ||| |||  |||| | |||||||||||||||||||||||  | ||||||||| ||||||||    
T  22821039 atcttt-ttcatattttgtttgacaaactcacaatgcttcttgtttatgcatcattagtttgag 22820977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 46691809 - 46691666
Alignment:
Q  2 tttgattgattgatggtgatggctcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagct------ 95  Q
    |||||||| |||||| |||||| | |||||||||||| ||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||          
T  46691809 tttgattggttgatgttgatggttattgctgctctctctacaaagataactcactttggctggttgttgctctccattggttttgctgacagctgattag 46691710  T
Q  96 --gatttagtttatttttatgggttaatttgtaacaagcttaaa 137  Q
      |||||||||||||||| || | ||||||||||||||||||||    
T  46691709 ctgatttagtttatttttctgagataatttgtaacaagcttaaa 46691666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 16462826 - 16462966
Alignment:
Q  118 taatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaa 217  Q
    |||| |||||||| | |||||||| |||||  ||  ||||||||||||||||||||||||||||  |||||||||||||| |||  |||  | |||||||    
T  16462826 taatatgtaacaaacataaagcttggtaagactcaacttgaggggtagtgttagaactttatat--tatttagtatgttt-ttcatattctgtttgacaa 16462922  T
Q  218 actcacaatgcttctttgtgatgcatcatgagtttgagggtagg 261  Q
    ||||||||||||||||  || |||||||||||||||||||||||    
T  16462923 actcacaatgcttcttgttgttgcatcatgagtttgagggtagg 16462966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 257
Target Start/End: Complemental strand, 2593355 - 2593209
Alignment:
Q  103 tttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcg 202  Q
    ||||||||| | ||||||||| |||||||||  |||||||||||||||   ||||| ||||| |||||||||||||||      ||| ||||||| ||||    
T  2593355 tttatttttttaggttaatttttaacaagctagaagcttagtaagcttttacttga-gggtattgttagaactttata------ttattatgttt-ttcg 2593264  T
Q  203 aatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgaggg 257  Q
     ||||   || |||||||||||||| |||||  |||||||| |||||||||||||    
T  2593263 tattttctttaacaaactcacaatgtttcttgctgatgcatgatgagtttgaggg 2593209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 34338082 - 34338131
Alignment:
Q  116 gttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtag 165  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||    
T  34338082 gttaatttgtaacaagtttaaagcttagtaagctttagcttgaggggtag 34338131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 814580 - 814500
Alignment:
Q  179 tatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtag 260  Q
    ||||||||||||||||||| |||| |||| | ||||||||||||||||| |||||  |||  |||  |||||||||||||||    
T  814580 tatattatttagtatgttt-ttcgtattttgtttgacaaactcacaatgtttcttgttgactcattgtgagtttgagggtag 814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 50297370 - 50297431
Alignment:
Q  172 aactttatat-attatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctt 233  Q
    |||||||||| |||||||||||||||| |||| |||| | ||||||||||||||||| |||||    
T  50297370 aactttatattattatttagtatgttt-ttcgtattttgtttgacaaactcacaatgtttctt 50297431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 46573941 - 46573990
Alignment:
Q  120 atttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgtt 169  Q
    ||||||||||||| ||||||||| |||||||  |||||||||| ||||||    
T  46573941 atttgtaacaagcataaagcttattaagcttaagcttgagggggagtgtt 46573990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 814167 - 814231
Alignment:
Q  166 tgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctt 233  Q
    |||||||||||||||  |||||||||||| ||||||| |||| | |||||||| |||||||| |||||    
T  814167 tgttagaactttata--ttatttagtatg-ttcttcgtattttgtttgacaaagtcacaatgtttctt 814231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 232
Target Start/End: Original strand, 20242500 - 20242697
Alignment:
Q  28 tgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaa 127  Q
    ||||||||||| ||  |||||||||||||||||    |||||||||| |||||||| |||| ||||||||||| |||||||||| | | |||||||||||    
T  20242500 tgctgctctctctacaaagataactcactttgg----ttgctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaa 20242595  T
Q  128 caagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatg 227  Q
     | |||||||||||||||||| ||  |||||||||| ||||| ||||||  ||||||| ||||||| ||| |||| |||| | |||||||||||||||||    
T  20242596 taggcttaaagcttagtaagcctcaacttgaggggtggtgtttgaactt--tatattacttagtatattt-ttcgtattttgtttgacaaactcacaatg 20242692  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 20250660 - 20250463
Alignment:
Q  28 tgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttgtaa 127  Q
    ||||||||||| ||  ||||||||||||||||||||    ||||||| |||||||| |||| ||||||||||| |||||||||| | | |||||||||||    
T  20250660 tgctgctctctctacaaagataactcactttggttg----ctgctcttcattggttctgctaacagctgatttggtttatttttctagattaatttgtaa 20250565  T
Q  128 caagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcacaatg 227  Q
     | |||||||||||||||||| ||  |||||||||| ||||| |||||||  |||||| ||||||| ||| |||| |||| | |||||||||||||||||    
T  20250564 taggcttaaagcttagtaagcctcaacttgaggggtggtgtttgaacttt--atattacttagtatattt-ttcgtattttgtttgacaaactcacaatg 20250468  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 255
Target Start/End: Original strand, 5616763 - 5616922
Alignment:
Q  92 agctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagt 191  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||  |||| |||||||||||||||||||  ||||||||||| |    
T  5616763 agctgatttggtttattttt-tgggttaatttgtaacaagtttaaagcttagtaggctttagctttaggggtagtgttagaactt--tatattatttaat 5616859  T
Q  192 atgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgag 255  Q
    || ||| |||  |||| | |||||||||||||||||||||||  | ||||||||| ||||||||    
T  5616860 atcttt-ttcatattttgtttgacaaactcacaatgcttcttgtttatgcatcattagtttgag 5616922  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 259
Target Start/End: Complemental strand, 16579057 - 16578896
Alignment:
Q  94 ctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgagggg--tagtgttagaactttatatattatttagt 191  Q
    ||||||| |||||||||||  ||||||||||||||||| |||||||||| |||||||   |||||||||  ||||||| |||   | ||||||||||||     
T  16579057 ctgatttggtttattttta--ggttaatttgtaacaagtttaaagcttattaagctttaacttgaggggtatagtgttggaa---tttatattatttagg 16578963  T
Q  192 atgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggta 259  Q
    |||||| |||| | || | |||||||||||| |||| |||||  | ||||| ||||| ||||| ||||    
T  16578962 atgttt-ttcgtaatttgtttgacaaactcataatgtttcttgttaatgcaacatgaatttgaaggta 16578896  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 43615376 - 43615450
Alignment:
Q  179 tatattatttagtatgtttcttcgaatttagattgacaaactcacaatgcttctttgtgatgcatcatgagtttga 254  Q
    ||||||||||||||||||| |||| |||| | |||||||||||||||||||||||  |||| |||  |||||||||    
T  43615376 tatattatttagtatgttt-ttcgtattttgtttgacaaactcacaatgcttcttgttgattcattgtgagtttga 43615450  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 16583797 - 16583729
Alignment:
Q  94 ctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggta 164  Q
    ||||||| ||||||||| |  |||||||||||| |||  ||||||||||||||||||  ||||||||||||    
T  16583797 ctgatttggtttattttaa--ggttaatttgtatcaaatttaaagcttagtaagctttagcttgaggggta 16583729  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 2098553 - 2098503
Alignment:
Q  211 ttgacaaactcacaatgcttctttgtgatgcatcatgagtttgagggtagg 261  Q
    ||||||||||||||||  |||||  |||||||||||||||||||| |||||    
T  2098553 ttgacaaactcacaatatttcttgttgatgcatcatgagtttgagtgtagg 2098503  T

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Target: scaffold0007 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 14594 - 14395
Alignment:
Q  25 tcttgctgctctctttaggaagataactcactttggttggttgctgctctccattggttttgctgacagctgatttagtttatttttatgggttaatttg 124  Q
    |||||||||||||| || |||| || |||||||||||||    |||||||  ||||||| |  | |||||||||||  ||||||||  | ||| ||||||    
T  14594 tcttgctgctctctctacgaaggtagctcactttggttg----ctgctctttattggttcttttaacagctgatttgatttattttcctcggtcaatttg 14499  T
Q  125 taacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttatatattatttagtatgtttcttcgaatttagattgacaaactcaca 224  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||  || ||||||| ||||||||||| |||| |||| | |||||||| | |||    
T  14498 taacaagcttaaagcttagtaagcttcagcttgagaggtggtgttagaa--ttttatattaattagtatgttt-ttcgtattttgtttgacaaaattaca 14402  T

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Target: scaffold0499 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 180
Target Start/End: Complemental strand, 7132 - 7045
Alignment:
Q  92 agctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaactttata 180  Q
    ||||||||| ||||||||| | || |||||||||||| |||||||| ||||||||||||  |||| |||||||||||||||| ||||||    
T  7132 agctgatttggtttattttcaagg-ttaatttgtaacgagcttaaaccttagtaagctttagcttaaggggtagtgttagaagtttata 7045  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 31956 - 32014
Alignment:
Q  115 ggttaatttgtaacaagcttaaagcttagtaagcttccgcttgaggggtagtgttagaa 173  Q
    |||| |||||||||||||||||||||||||||||||  || ||||||| ||||||||||    
T  31956 ggtttatttgtaacaagcttaaagcttagtaagctttagcctgagggggagtgttagaa 32014  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 154766 - 154713
Alignment:
Q  92 agctgatttagtttatttttatgggttaatttgtaacaagcttaaagcttagtaa 146  Q
    |||| |||| ||||||||||| ||||||||||||||||| |||||| ||||||||    
T  154766 agctaatttggtttattttta-gggttaatttgtaacaaacttaaaacttagtaa 154713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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