View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7699_low_3 (Length: 742)

Name: NF7699_low_3
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7699_low_3
NF7699_low_3
[»] chr3 (9 HSPs)
chr3 (18-726)||(46954599-46955307)
chr3 (10-137)||(46954473-46954600)
chr3 (524-663)||(46950777-46950916)
chr3 (574-726)||(46958008-46958160)
chr3 (574-662)||(46997329-46997417)
chr3 (574-659)||(47000992-47001077)
chr3 (574-661)||(46980255-46980342)
chr3 (574-662)||(46974266-46974354)
chr3 (574-662)||(46995069-46995157)
[»] chr1 (2 HSPs)
chr1 (10-209)||(50234839-50235038)
chr1 (299-359)||(50391945-50392005)


Alignment Details
Target: chr3 (Bit Score: 677; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 18 - 726
Target Start/End: Original strand, 46954599 - 46955307
Alignment:
Q  18 tataaactggcactcttacgaataactcccccaaaacctgcgcaaattggagttcttaaacagctcccatccacgttaaggatatggcagtgatgattat 117  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46954599 tataaaccggcactgttacgaataactcccccaaaacctgcgcgaattggagttcttaaacagctcccatccacgttaaggatatggcagtgatgattat 46954698  T
Q  118 tactgttccatttgaccatacgatcagtaggtgaaacgccgttgctttgaaaacttgctttgctagtatcagcagaattctggatgtggaagccaaatga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46954699 tactgttccatttgaccatacgatcagtaggtgaaacgccgttgctttgaaaacttgctttgatagtatcagcagaattctggatgtggaagccaaatga 46954798  T
Q  218 tgattttgagtgaaggctttagagctatatagttgttggggggtgtctggagcagaaacggatcaatactccaggaccacctctccttctaaaactttaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46954799 tgattttgagtgaaggctttagagctatatagttgttggggggtgtctggagcagaaacggatcaatactccaggaccacctctccttctaaaactttaa 46954898  T
Q  318 aacattaagtatatgagttacatatcttatatatcaaacattgtattcattcatacattccaattctattcaaatatatgttaatttatttctaggaagc 417  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||    
T  46954899 aacgttaagtatatgagttacatatcttatatatcaaacattgtattcattcatatatttcaattcttttcaaatatatgttaatttatttctaggaagc 46954998  T
Q  418 tttgctaaaatttacagaagattagaaaaattgaccacagaaactgcattcataaaatcttcgtctgattctagcgcactcattgcattaggcaaaaggg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46954999 tttgctaaaatttacagaagattagaaaaattgaccacagaaactgcattcataaaatcttcgtctgattctagcgcactcattgcattaggcaaaaggg 46955098  T
Q  518 acactgccaaatccatgcttcctcctccttcaaatccctcataggctgtcacgttgccatcaaatttgtttgcatatccacttagaactgcaaccgcttt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46955099 acactgccaaatccatgcttcctcctccttcaaatccctcataggctgtcacgttgccatcaaatttgtttgcatatccacttagaactgcaaccgcttt 46955198  T
Q  618 tcccattccaaattcatttccatacatattgaaccttggtgaacttgacatcaccacactgaagggatcaaaatggcgaccaagttggtagacaaccgga 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46955199 tcccattccaaattcatttccatacatattgaaccttggtgaacttgacatcaccacactgaagggatcaaaatggcgaccaagttggtagacaaccgga 46955298  T
Q  718 gactctaac 726  Q
    |||||||||    
T  46955299 gactctaac 46955307  T

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Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 46954473 - 46954600
Alignment:
Q  10 cagagaggtataaactggcactcttacgaataactcccccaaaacctgcgcaaattggagttcttaaacagctcccatccacgttaaggatatggcagtg 109  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46954473 cagagaggtataaaccggcactgttacgaataactcccccaaaacctgcgcgaattggagttcttaaacagctcccatccacgttaaggatatggcagtg 46954572  T
Q  110 atgattattactgttccatttgaccata 137  Q
    ||||||||||||||||||||||||||||    
T  46954573 atgattattactgttccatttgaccata 46954600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 524 - 663
Target Start/End: Original strand, 46950777 - 46950916
Alignment:
Q  524 ccaaatccatgcttcctcctccttcaaatccctcataggctgtcacgttgccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccat 623  Q
    ||||||||||||| ||||||||||||  ||||||||| |||||||| || |||||| ||||||||||||| ||||| | |||||| || | |||||||||    
T  46950777 ccaaatccatgctccctcctccttcatgtccctcatatgctgtcacattcccatcacatttgtttgcataaccactcaaaactgccactggttttcccat 46950876  T
Q  624 tccaaattcatttccatacatattgaaccttggtgaactt 663  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  46950877 tccaaattcatttccatacatattaaaccttggtgaactt 46950916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 574 - 726
Target Start/End: Original strand, 46958008 - 46958160
Alignment:
Q  574 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaacttgacatcacca 673  Q
    |||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||     |    
T  46958008 ccatcaaatttgtttgcatatccactcagaactgccatcgctttacccattccaaattcattcccatacatattgaaccttggcgaactagacactgtga 46958107  T
Q  674 cactgaagggatcaaaatggcgaccaagttggtagacaaccggagactctaac 726  Q
     |||   ||||||||| |||||||| |||||||| ||||| ||||||||||||    
T  46958108 tactttggggatcaaagtggcgaccgagttggtatacaacaggagactctaac 46958160  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 574 - 662
Target Start/End: Original strand, 46997329 - 46997417
Alignment:
Q  574 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaact 662  Q
    |||||||||||||| ||||||||||||  |||||| |  ||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  46997329 ccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaacctcggtgaact 46997417  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 574 - 659
Target Start/End: Original strand, 47000992 - 47001077
Alignment:
Q  574 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtga 659  Q
    |||||||||||||| ||||||| ||||  |||||| |  ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  47000992 ccatcaaatttgttagcatatcaacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaaccttggtga 47001077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 574 - 661
Target Start/End: Original strand, 46980255 - 46980342
Alignment:
Q  574 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaac 661  Q
    |||||||||||||| ||||||||||||  |||||| |  |||||||||||||| ||||||||||||||| |||| ||||| |||||||    
T  46980255 ccatcaaatttgttagcatatccacttctaactgccaaagcttttcccattccgaattcatttccatacgtattaaacctcggtgaac 46980342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 662
Target Start/End: Original strand, 46974266 - 46974354
Alignment:
Q  574 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaact 662  Q
    ||||||||||| || ||||||||||||  |||||| |   |||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  46974266 ccatcaaatttattagcatatccacttctaactgccaaaacttttcccattccaaattcattcccatacatattaaacctcggtgaact 46974354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 574 - 662
Target Start/End: Original strand, 46995069 - 46995157
Alignment:
Q  574 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaact 662  Q
    |||||||| ||||| ||||||||||||  |||| | |  ||||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  46995069 ccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaact 46995157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 5e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 50234839 - 50235038
Alignment:
Q  10 cagagaggtataaactggcactcttacgaataactcccccaaaacctgcgcaaattggagttcttaaacagctcccatccacgttaaggatatggcagtg 109  Q
    ||||||||||||| | |||||| |||||||||||||||||||| ||||| | ||||||||||| | |||| ||||||||||| |||||||||||||||||    
T  50234839 cagagaggtataagccggcactgttacgaataactcccccaaagcctgcacgaattggagttcatgaacaactcccatccacattaaggatatggcagtg 50234938  T
Q  110 atgattattactgttccatttgaccatacgatcagtaggtgaaacgccgttgctttgaaaacttgctttgctagtatcagcagaattctggatgtggaag 209  Q
    ||||||||| ||||||||||||||||||||||||| || |||| | |||||||||||||||||||||||| | ||||| ||| |||| ||||||||||||    
T  50234939 atgattattgctgttccatttgaccatacgatcaggagttgaatcaccgttgctttgaaaacttgctttgattgtatcggcataattttggatgtggaag 50235038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 50391945 - 50392005
Alignment:
Q  299 tctccttctaaaactttaaaacattaagtatatgagttacatatcttatatatcaaacatt 359  Q
    ||||| || ||||| |||| |||||| |||||||||| |||||||||||||||| ||||||    
T  50391945 tctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatccaacatt 50392005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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