View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_30 (Length: 258)
Name: NF7699_low_30
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 24063 - 23910
Alignment:
| Q |
19 |
gtagcgtggtttaggttaagttgcgatatatttggaaaagtatgctaacaaaattaaacaacttggagttagatttcaacttacaaattcttaaacaatg |
118 |
Q |
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| T |
24063 |
gtagcgtggtttagattaagttgggatatatttgggaaagtatgctaacaaaattaaaaaatttggagttagatttcaacttagaaattcttaaacaatg |
23964 |
T |
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| Q |
119 |
aagtattaccaaccttccttctttgtagcaaaaataagatgggtattagtataa |
172 |
Q |
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| T |
23963 |
aagtattaccaaccttccttctttgtaccaaaaataagatgggtattagtataa |
23910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 9638132 - 9638088
Alignment:
| Q |
27 |
gtttaggttaagttgcgatatatttggaaaagtatgctaacaaaa |
71 |
Q |
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| T |
9638132 |
gtttaagttaagatgagatatatttggaaaagtaagctaacaaaa |
9638088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 135
Target Start/End: Complemental strand, 20290018 - 20289953
Alignment:
| Q |
74 |
aaacaacttggagttagattt-caacttacaaattctta---aacaatgaagtattaccaaccttc |
135 |
Q |
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| T |
20290018 |
aaacaacttggagttagattttcagcttacaaattcctactaaacattgaagtattaccaaccttc |
20289953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 32291349 - 32291393
Alignment:
| Q |
29 |
ttaggttaagttgcgatatatttggaaaagtatgctaacaaaatt |
73 |
Q |
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| T |
32291349 |
ttaggttaaggtgagatatatttagaaaagtaggctaacaaaatt |
32291393 |
T |
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