View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_31 (Length: 254)
Name: NF7699_low_31
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 45478259 - 45478025
Alignment:
| Q |
1 |
cctgccctaccctcagtttgctaatttgagcaacggaggatagatctcctgctctgttaccaagaatgagagccaagtggttttggatcatctcatatgc |
100 |
Q |
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| T |
45478259 |
cctgccctaccctcagtttgctaatttgagcaacggaggatagatctcctgctctgttaccaagaatgagagccaagtggttttggatcatctcatatgc |
45478160 |
T |
|
| Q |
101 |
ttcgttcgagtgaagctgctcaagtttcccatcttcatttgaccatgaatcgaccctaccagatgcatctggtgttatagagggtatcaaagagatatta |
200 |
Q |
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| T |
45478159 |
ttcgttcgagtgaagctgctcaagtttcccatcttcatttgaccatgaatcgaccctaccagatgcatctggtgttatagagggtatcaaagagatatta |
45478060 |
T |
|
| Q |
201 |
gcatccatgaacttttgcacaaccaatgtgtacaa |
235 |
Q |
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| T |
45478059 |
gcatccatgaacttttgcacaaccaatgtgtacaa |
45478025 |
T |
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Back To:
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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 234
Target Start/End: Complemental strand, 26488340 - 26488169
Alignment:
| Q |
63 |
agaatgagagccaagtggttttggatcatctcatatgcttcgttcgagtgaagctgctcaagtttcccatcttcatttgaccatgaatcgaccctaccag |
162 |
Q |
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|||| ||||||||||||| ||||||||| ||||| ||||| ||||||||| | ||| ||||| |||||||| ||| |||||||||||| ||||| |
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| T |
26488340 |
agaaggagagccaagtggctttggatcaattcataggcttcaggcgagtgaagatcctctagttttccatcttcgcttggccatgaatcgacttgaccag |
26488241 |
T |
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| Q |
163 |
atgcatctggtgttatagagggtatcaaagagatattagcatccatgaacttttgcacaaccaatgtgtaca |
234 |
Q |
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| T |
26488240 |
atggatttgccgttatggagggtactaaagaaacattggcatccataaatttctgcactaccaatgtgtaca |
26488169 |
T |
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