View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_34 (Length: 248)
Name: NF7699_low_34
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 37780895 - 37780716
Alignment:
| Q |
29 |
attattctaaagtgaaaagtgtgagtacccgaaggatatggccatgataaaggtaactcctggaataaggttatacaacgacatcataaacgttgctgaa |
128 |
Q |
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| T |
37780895 |
attattctaaagtgaaaagagtgagtacccgaaggatatggccatgatgaaggtaactcctggaataaggttgtacaatgacatcataaacgttgctgaa |
37780796 |
T |
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| Q |
129 |
ataaaagtcagtcccatgccataaaggtttagaagtaaacttcccctggaacatacattgaccatattagtatctttaat |
208 |
Q |
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| T |
37780795 |
ataaaagtcagtcccatgccataaaggtttagaagtaaacttcccctggaacatacattgaccatattagtatctttaat |
37780716 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 212
Target Start/End: Complemental strand, 37807619 - 37807470
Alignment:
| Q |
63 |
gatatggccatgataaaggtaactcctggaataaggttatacaacgacatcataaacgttgctgaaataaaagtcagtcccatgccataaaggtttagaa |
162 |
Q |
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|||||||||||||| ||||||| ||||||||||||||| ||| |||| |||||||||||||||| | ||| || | | ||||||||||||||||| |
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| T |
37807619 |
gatatggccatgatgaaggtaattcctggaataaggttggacatggacaacataaacgttgctgaagtcaaatcgagggcaacgccataaaggtttagaa |
37807520 |
T |
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| Q |
163 |
gtaaacttcccctggaaca-tacattgaccatattagtatctttaattaat |
212 |
Q |
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| T |
37807519 |
ataaacttcccctgcaacattaca-taaccatattagtatctttaattaat |
37807470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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