View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7699_low_35 (Length: 231)

Name: NF7699_low_35
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7699_low_35
NF7699_low_35
[»] chr4 (7 HSPs)
chr4 (15-212)||(22645630-22645827)
chr4 (48-211)||(35089438-35089601)
chr4 (48-208)||(16367434-16367594)
chr4 (128-212)||(1643860-1643944)
chr4 (44-156)||(23165301-23165413)
chr4 (115-208)||(13990065-13990158)
chr4 (102-166)||(17131911-17131975)
[»] chr8 (4 HSPs)
chr8 (44-211)||(15760597-15760764)
chr8 (102-208)||(44231284-44231390)
chr8 (113-208)||(19873563-19873658)
chr8 (108-209)||(13387613-13387714)
[»] chr5 (5 HSPs)
chr5 (44-148)||(30997676-30997780)
chr5 (48-212)||(23883365-23883529)
chr5 (39-196)||(36731219-36731376)
chr5 (44-172)||(9281544-9281672)
chr5 (48-96)||(26619484-26619532)
[»] chr7 (4 HSPs)
chr7 (63-212)||(20138730-20138879)
chr7 (63-211)||(20060406-20060553)
chr7 (106-169)||(10293143-10293206)
chr7 (113-166)||(18479552-18479605)
[»] chr1 (4 HSPs)
chr1 (39-212)||(37736684-37736857)
chr1 (60-208)||(13084146-13084293)
chr1 (54-208)||(52779952-52780106)
chr1 (102-198)||(14457779-14457875)
[»] chr2 (4 HSPs)
chr2 (48-208)||(27034105-27034265)
chr2 (117-211)||(20040739-20040833)
chr2 (90-212)||(23682882-23683004)
chr2 (113-178)||(34977782-34977847)
[»] chr3 (8 HSPs)
chr3 (48-148)||(44666358-44666458)
chr3 (109-166)||(6415727-6415784)
chr3 (65-208)||(19584576-19584719)
chr3 (54-208)||(12298672-12298826)
chr3 (113-212)||(12996089-12996188)
chr3 (104-163)||(16155721-16155780)
chr3 (115-208)||(31193042-31193135)
chr3 (115-208)||(52775178-52775271)
[»] scaffold0257 (2 HSPs)
scaffold0257 (33-175)||(6869-7011)
scaffold0257 (33-175)||(8964-9106)
[»] scaffold0329 (1 HSPs)
scaffold0329 (54-208)||(13281-13435)
[»] chr6 (5 HSPs)
chr6 (113-166)||(28294441-28294494)
chr6 (113-166)||(28517579-28517632)
chr6 (74-208)||(34069049-34069183)
chr6 (115-208)||(26135590-26135683)
chr6 (114-163)||(33461886-33461935)
[»] scaffold0014 (1 HSPs)
scaffold0014 (115-208)||(93759-93852)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 22645827 - 22645630
Alignment:
Q  15 agcagagaaaatgttttgggaagaagaggttttgtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatt 114  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22645827 agcagagaaaatgttttgggaagaagagcttttgtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatt 22645728  T
Q  115 tttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcacaatag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22645727 tttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcagcaatatgaagggcactctggttatcacaatag 22645630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 35089601 - 35089438
Alignment:
Q  48 gtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaat 147  Q
    |||||||| ||||| | |||||| || |||||||||||||| ||||||||||  |||  ||| |  || ||||| || || ||||| |||||||| | ||    
T  35089601 gtgaagaagtcagccaattgatcctgggaagaaactgggagcagtttcagaatgccattttgaagcttctctctgactatgtgacaatcaatctcaagat 35089502  T
Q  148 gtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcacaata 211  Q
    ||||||||||||||||||| ||||| |||||  | || || || |||||||| |||||||||||    
T  35089501 gtttggttctctcatggaaaacaggattggctgctatgtggagagcactctgattatcacaata 35089438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 16367434 - 16367594
Alignment:
Q  48 gtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaat 147  Q
    |||||||| ||||| | |||||||||||||||||||| ||| ||||||||||  |||  ||| |  ||  |||| || || ||||||| |||||| | ||    
T  16367434 gtgaagaagtcagccaattgatcttgagaagaaactgtgagcagtttcagaatgccattttgaagcttccctctgactatgtgacagttaatctcaagat 16367533  T
Q  148 gtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    | ||||||||||||||||| ||||| |||||  |||| || || |||||||  ||||||||    
T  16367534 gcttggttctctcatggaaaacaggattggctgcaatgtggagagcactctaattatcaca 16367594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 1643944 - 1643860
Alignment:
Q  128 atgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcacaatag 212  Q
    |||||||||||| ||||| |||||||| |  |||||||||||||| || |||  |||||| || |||||||||||||| ||||||    
T  1643944 atgacagtcaatgtccaagtgtttggtgcgttcatggaagacaggattcgcagaaatatgtagagcactctggttatcgcaatag 1643860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 23165301 - 23165413
Alignment:
Q  44 ttttgtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctcc 143  Q
    |||||||||||||||||| | ||||||||| ||||||||||  || | ||| ||||| || |  |||||||| || ||||  |  ||||||||||| |||    
T  23165301 ttttgtgaagaaatcagccacttgatcttgtgaagaaactgtaagtaatttgagaacccctgactgcaatttgtccctaattaagtgacagtcaatttcc 23165400  T
Q  144 aaatgtttggttc 156  Q
    |||||||| ||||    
T  23165401 aaatgttttgttc 23165413  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 13990158 - 13990065
Alignment:
Q  115 tttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    |||||||||||| ||| || || |||||||| ||||| ||||||||||| || ||||| ||  || ||||||| |  |||||||| ||||||||    
T  13990158 tttctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacaggattcccagcaatatgtattgcactctgattatcaca 13990065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 17131975 - 17131911
Alignment:
Q  102 ccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaa 166  Q
    |||||||| | |||||| || ||||||||||||||||| || |  ||||||||||| ||||||||    
T  17131975 ccagcttgaagtttttccctcacaatatgacagtcaatttcaaggtgtttggttctttcatggaa 17131911  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 15760764 - 15760597
Alignment:
Q  44 ttttgtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctcc 143  Q
    ||||||||| ||||| || | |||||||| ||||||||  ||||||||||| |  | ||||||||||||||| ||||| || |||||||||||||||||     
T  15760764 ttttgtgaaaaaatctgccacttgatctttagaagaaatagggagaagtttgaacaaaccagcttgcaatttctctctgactatatgacagtcaatctca 15760665  T
Q  144 aaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcacaata 211  Q
    | ||||||||| |  |||||||||||||| || ||| |||| |  |  ||||||||||||||||||||    
T  15760664 agatgtttggtgcattcatggaagacaggattagcagcaatgtagatagcactctggttatcacaata 15760597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 44231390 - 44231284
Alignment:
Q  102 ccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggt 201  Q
    |||||||| | ||| |||||||| | || |||||||||||||||||| || ||||  ||||| || || || || ||| | ||||||||||||||||| |    
T  44231390 ccagcttgaagtttctctctaaccagataacagtcaatctccaaatgctttgttcgttcatgaaaaactggattagcagctatatgaagggcactctgat 44231291  T
Q  202 tatcaca 208  Q
    |||||||    
T  44231290 tatcaca 44231284  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 208
Target Start/End: Complemental strand, 19873658 - 19873563
Alignment:
Q  113 tttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    ||||||||| ||||| || |||||||| ||||||||||| ||||| |||||||| || || || ||    || ||||| |||||||||||||||||    
T  19873658 tttttctctgacaatgtgccagtcaatttccaaatgtttagttctttcatggaacactggattagctgagatgtgaagagcactctggttatcaca 19873563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 13387714 - 13387613
Alignment:
Q  108 tgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcac 207  Q
    ||||| ||||||||||||| ||| || ||||| ||||| |||||||| ||||||| ||| ||| | || ||| ||||||| || ||||| || || ||||    
T  13387714 tgcaacttttctctaacaagatggcaatcaatttccaagtgtttggtcctctcatagaatacatgatttgcagcaatatggagagcactatgattgtcac 13387615  T
Q  208 aa 209  Q
    ||    
T  13387614 aa 13387613  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 30997676 - 30997780
Alignment:
Q  44 ttttgtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctcc 143  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||  |  ||| |||| | ||||||||| || | |||||| |||||||||    
T  30997676 ttttgtgaagaaatcagcaatttgatcttgagaagaaacagggataagcttcatgatgccaacttgaagtttttctctcaccagatgacaatcaatctcc 30997775  T
Q  144 aaatg 148  Q
    |||||    
T  30997776 aaatg 30997780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 212
Target Start/End: Original strand, 23883365 - 23883529
Alignment:
Q  48 gtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaat 147  Q
    ||||||||||| |||||||||| ||||||||  |  || || |||||||  |||| |||||| | ||| |||||||| | ||||||||| ||||| |  |    
T  23883365 gtgaagaaatctgcaatttgattttgagaagtgataggaagcagtttcatcacacgagcttggagtttctctctaaccaaatgacagtctatctcaaggt 23883464  T
Q  148 gtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcacaatag 212  Q
    | || ||||||||||| ||  |||| |||||  |||||| |||||||||||  ||||||||||||    
T  23883465 gctttgttctctcatgaaaagcaggattggctgcaatataaagggcactctaattatcacaatag 23883529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 36731219 - 36731376
Alignment:
Q  39 agaggttttgtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaa 138  Q
    |||| ||| ||||| ||||| ||||||||||  |||||||  | ||| || |||||||  ||||||||||| | ||| |||||||| | ||||||||| |    
T  36731219 agagatttagtgaaaaaatctgcaatttgattatgagaagtgattggaagtagtttcatcacaccagcttgaagtttctctctaaccagatgacagtcta 36731318  T
Q  139 tctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcact 196  Q
    | || | |||||| ||||||||||| || ||||| |||||  |||||| ||| |||||    
T  36731319 tttcaagatgttttgttctctcatgaaaaacaggattggctgcaatataaagagcact 36731376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 9281672 - 9281544
Alignment:
Q  44 ttttgtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctcc 143  Q
    ||||||||| |||||||| | ||| ||||| ||||||||||| || ||||| || |  |||| |||||  ||||||||||  | |||||| ||||||||     
T  9281672 ttttgtgaaaaaatcagctacttggtcttgtgaagaaactggaagcagtttgagcatgccagattgcagcttttctctaatcagatgacaatcaatctct 9281573  T
Q  144 aaatgtttggttctctcatggaagacagg 172  Q
    || || ||||  |||||||| || |||||    
T  9281572 aattgcttgggcctctcatgaaaaacagg 9281544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 26619484 - 26619532
Alignment:
Q  48 gtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttca 96  Q
    |||||||||||| ||||||| ||||  ||||||||||| ||||||||||    
T  26619484 gtgaagaaatcaacaatttggtctttggaagaaactggaagaagtttca 26619532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 212
Target Start/End: Complemental strand, 20138879 - 20138730
Alignment:
Q  63 atttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcat 162  Q
    |||||||| |||||||||||||| ||||| |||||||  |||| ||||||||| ||||| || |||||| ||||||| || |  || ||||  |||||||    
T  20138879 atttgatcatgagaagaaactggtagaagcttcagaattccagattgcaatttctctctgactatatgatagtcaatttcaaggtgcttgggcctctcat 20138780  T
Q  163 ggaagacagggttggcaacaatatgaagggcactctggttatcacaatag 212  Q
    | ||||||| ||| | |||||| ||||| |||||  | ||||||||||||    
T  20138779 gaaagacagagttagaaacaatgtgaagtgcactacgattatcacaatag 20138730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 20060553 - 20060406
Alignment:
Q  63 atttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcat 162  Q
    ||||| ||||||||||||||||| |  |  |||| |||||||| || || ||| ||||||| |||||||||||||||||||||||||||| | || ||||    
T  20060553 atttggtcttgagaagaaactggaaacaacttcataacaccag-ttacagtttctctctaataatatgacagtcaatctccaaatgtttgctcctttcat 20060455  T
Q  163 ggaagacagggttggcaacaatatgaagggcactctggttatcacaata 211  Q
    | || |  ||||| ||| ||||||| |   |||||| ||||||||||||    
T  20060454 gaaaaattgggtttgcagcaatatggaaatcactctagttatcacaata 20060406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 10293206 - 10293143
Alignment:
Q  106 cttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagac 169  Q
    |||| |||||||| || |||||||| |||||||| |  | ||||||||||||||||||||||||    
T  10293206 cttgtaatttttccctcacaatatgccagtcaattttaagatgtttggttctctcatggaagac 10293143  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 18479552 - 18479605
Alignment:
Q  113 tttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaa 166  Q
    ||||||||| ||||| || |||||||| ||||||||||| ||||| ||||||||    
T  18479552 tttttctctgacaatgtggcagtcaatttccaaatgtttagttctttcatggaa 18479605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 212
Target Start/End: Original strand, 37736684 - 37736857
Alignment:
Q  39 agaggttttgtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaa 138  Q
    |||| ||| ||||| ||||| ||||||||||  |||||||  |  || || |||||||  ||||||||||| | ||| |||||||| | ||||||||| |    
T  37736684 agagatttagtgaaaaaatctgcaatttgattctgagaagtgataggaagtagtttcatcacaccagcttgaagtttctctctaaccagatgacagtcta 37736783  T
Q  139 tctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcacaatag 212  Q
    | || | |||||||||||||||||| || ||||| |||||  |||||| ||| ||||| || ||||||||||||    
T  37736784 tttcaagatgtttggttctctcatgaaaaacaggattggctgcaatataaagagcactttgattatcacaatag 37736857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 208
Target Start/End: Complemental strand, 13084293 - 13084146
Alignment:
Q  60 gcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctct 159  Q
    |||||||| |||||||||||||||| |||||  ||||  |  |||||||||||||||||| | |  ||||||||||||||||| || |||||||| ||||    
T  13084293 gcaatttg-tcttgagaagaaactgtgagaaacttcaagatgccagcttgcaatttttctatgattatatgacagtcaatctcgaagtgtttggtcctct 13084195  T
Q  160 catggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    |||| || ||||||||  || | |||| ||| ||||| || ||||||||    
T  13084194 catgaaatacagggtttacagctatattaagtgcactttgattatcaca 13084146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 52780106 - 52779952
Alignment:
Q  54 aaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttgg 153  Q
    |||||||| | |||||||||||| ||||||||||| | ||| || |  || ||||| |  |||||||| || ||||| || ||||| |||||||||||||    
T  52780106 aaatcagctacttgatcttgagatgaaactgggagcaatttgaggatgcctgcttgtaccttttctctgactatatggcaatcaatttccaaatgtttgg 52780007  T
Q  154 ttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    | |  ||||| ||||| || || ||| | ||||| |||||||| || ||||||||    
T  52780006 tgcgttcatgaaagaccggattagcagctatatggagggcactttgattatcaca 52779952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 14457875 - 14457779
Alignment:
Q  102 ccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactct 198  Q
    |||||||| || || |||||||| | |||||||||||||||||| || ||||| || | |||||| ||||| || ||| |||| ||||| |||||||    
T  14457875 ccagcttgtaacttctctctaacgagatgacagtcaatctccaagtgcttggtcctttaatggaaaacaggattagcagcaatgtgaagtgcactct 14457779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 27034105 - 27034265
Alignment:
Q  48 gtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaat 147  Q
    |||||||| ||||| | |||||| ||||||||||||||||| ||||||||||  |||  ||| |  || ||||| || || ||||||| |||||| | ||    
T  27034105 gtgaagaagtcagccaattgatcctgagaagaaactgggagcagtttcagaatgccattttgaagcttctctctgactatgtgacagttaatctcaagat 27034204  T
Q  148 gtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    | ||||||||||||| ||| | |||||||||  |||| || || |||||||| ||||||||    
T  27034205 gcttggttctctcatcgaaaatagggttggctgcaatgtggagagcactctgattatcaca 27034265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 20040739 - 20040833
Alignment:
Q  117 tctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcacaata 211  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||| || ||||||||| |  |||| ||||  || ||||| |||||||||||    
T  20040739 tctctaacaaaatggcagtcaatctccaaatgttttgttctctcatgaaatacagggttgcctgcaatgtgaattgcgctctgattatcacaata 20040833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 23683004 - 23682882
Alignment:
Q  90 agtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaa 189  Q
    |||||||  ||||||||||| | ||| |||||||| | ||||||||| || || | ||||||  |||||||||| || ||||| |||||  |||||| ||    
T  23683004 agtttcatcacaccagcttgaagtttctctctaaccagatgacagtctatttcaagatgttttattctctcatgaaaaacaggattggctgcaatataaa 23682905  T
Q  190 gggcactctggttatcacaatag 212  Q
    | ||||| || ||||||||||||    
T  23682904 gagcactttgattatcacaatag 23682882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 34977782 - 34977847
Alignment:
Q  113 tttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggc 178  Q
    |||||| || ||||| || ||||||||||| | |||| ||||||||||||||||||| ||||||||    
T  34977782 tttttccctcacaatgtggcagtcaatctctagatgtatggttctctcatggaagactgggttggc 34977847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 44666358 - 44666458
Alignment:
Q  48 gtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaat 147  Q
    ||||| |||||||||| |||||||||||||||||| || |||||||||| ||  |||||||| | ||||||||| || | ||| || ||||| |||||||    
T  44666358 gtgaaaaaatcagcaagttgatcttgagaagaaacaggcagaagtttcaaaatgccagcttgaagtttttctctgactagatggcaatcaatttccaaat 44666457  T
Q  148 g 148  Q
    |    
T  44666458 g 44666458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 6415727 - 6415784
Alignment:
Q  109 gcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaa 166  Q
    ||||| |||||||||||| ||||||||| ||||||| |||||| ||||||||||||||    
T  6415727 gcaatctttctctaacaaaatgacagtctatctccagatgttttgttctctcatggaa 6415784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 19584576 - 19584719
Alignment:
Q  65 ttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatgg 164  Q
    |||||||||||| ||||||||||| | ||| || |  || ||||| |  |||||||| || ||||| || ||||| |||||||||||||| |  |||||     
T  19584576 ttgatcttgagaggaaactgggagcaatttgaggatgcctgcttgaaccttttctctgactatatggcaatcaatttccaaatgtttggtgcgttcatga 19584675  T
Q  165 aagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    ||||| || || ||| | ||||| ||||||||||| ||||||||    
T  19584676 aagaccggattagcagctatatggagggcactctgattatcaca 19584719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 12298826 - 12298672
Alignment:
Q  54 aaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttgg 153  Q
    |||||||| | |||||||||||| ||||||||||| | ||| || |  || ||||| |  |||||||| || ||||| || ||||| |||||||||||||    
T  12298826 aaatcagctacttgatcttgagaggaaactgggagcaatttgaggatgcctgcttgtaccttttctctgactatatggcaatcaatttccaaatgtttgg 12298727  T
Q  154 ttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    | |  ||||| ||||| || || ||| | ||||| |||||||| || ||||||||    
T  12298726 tgcgttcatgaaagaccggattagcagctatatggagggcactttgattatcaca 12298672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 12996188 - 12996089
Alignment:
Q  113 tttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcacaatag 212  Q
    ||||||||| || |||||||| ||||| |||||||||||| | | | |||| || ||||| || |||   ||||| ||||||||||| ||||||||||||    
T  12996188 tttttctcttactatatgacaatcaatatccaaatgtttgttgcgcccatgaaacacaggattagcagttatatggagggcactctgattatcacaatag 12996089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 16155780 - 16155721
Alignment:
Q  104 agcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatg 163  Q
    |||||||||||||||||| || ||||||||  ||||||| || |||||||| ||||||||    
T  16155780 agcttgcaatttttctctgactatatgacaaccaatctctaagtgtttggtcctctcatg 16155721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 31193042 - 31193135
Alignment:
Q  115 tttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    |||||||||||| ||| || || |||||||| ||||| ||||||||||| || ||||| ||  || ||||||| |  |||||||| ||||||||    
T  31193042 tttctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacaggattcccagcaatatgtattgcactctgattatcaca 31193135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 52775271 - 52775178
Alignment:
Q  115 tttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    |||||||||||| ||| || || |||||||| ||||| ||||||||||| || ||||| ||  || ||||||| |  |||||||| ||||||||    
T  52775271 tttctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacaggattcccagcaatatgtattgcactctgattatcaca 52775178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 7011 - 6869
Alignment:
Q  33 ggaagaagaggttttgtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgac 132  Q
    ||||| |||||||| ||||||||||  || | ||||||||  ||||||||||| ||||||||||  |  || |||||||  |||||||| || | |||||    
T  7011 ggaaggagaggtttagtgaagaaatatgctagttgatcttttgaagaaactggcagaagtttcatgattcctgcttgcatcttttctctgaccagatgac 6912  T
Q  133 agtcaatctccaaatgtttggttctctcatggaagacagggtt 175  Q
    ||||||| |||||||| || || || ||||| || ||||||||    
T  6911 agtcaatttccaaatgctttgtcctttcatgaaaaacagggtt 6869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 9106 - 8964
Alignment:
Q  33 ggaagaagaggttttgtgaagaaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgac 132  Q
    ||||| |||||||| ||||||||||  || | ||||||||  ||||||||||| ||||||||||  |  || |||||||  |||||||| || | |||||    
T  9106 ggaaggagaggtttagtgaagaaatttgctagttgatcttttgaagaaactggcagaagtttcatgattcctgcttgcatcttttctctgaccagatgac 9007  T
Q  133 agtcaatctccaaatgtttggttctctcatggaagacagggtt 175  Q
    ||||||| |||||||| || || || ||||| || ||||||||    
T  9006 agtcaatttccaaatgctttgtcctttcatgaaaaacagggtt 8964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 13435 - 13281
Alignment:
Q  54 aaatcagcaatttgatcttgagaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttgg 153  Q
    |||||||| | |||||||||||| ||||||||||| | ||| || |  || ||||| |  |||||||| || ||||| || ||||| |||||||||||||    
T  13435 aaatcagctacttgatcttgagatgaaactgggagcaatttgaggatgcctgcttgtaccttttctctgactatatggcaatcaatttccaaatgtttgg 13336  T
Q  154 ttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    | |  ||||| ||||| || || ||| | ||||| |||||||| || ||||||||    
T  13335 tgcgttcatgaaagaccggattagcagctatatggagggcactttgattatcaca 13281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 28294494 - 28294441
Alignment:
Q  113 tttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaa 166  Q
    ||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||    
T  28294494 tttttctctgacaatgtgacagtcaatttccaaatgtttagttctttcatggaa 28294441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 28517579 - 28517632
Alignment:
Q  113 tttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaa 166  Q
    ||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||    
T  28517579 tttttctctgacaatgtgacagtcaatttccaaatgtttagttctttcatggaa 28517632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 34069183 - 34069049
Alignment:
Q  74 agaagaaactgggagaagtttcagaacaccagcttgcaatttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacaggg 173  Q
    ||||||||| |||||||| ||||  |  || ||||| | |||||||||||| |  |||||||||||||| |  || |||||||| ||||| ||||| |||    
T  34069183 agaagaaacagggagaagcttcattattcctgcttgtagtttttctctaaccaagtgacagtcaatctcaaggtgcttggttctttcatgaaagactggg 34069084  T
Q  174 ttggcaacaatatgaagggcactctggttatcaca 208  Q
    || ||  |||| || | |||||||||||| |||||    
T  34069083 ttagctgcaatgtgtaaggcactctggttgtcaca 34069049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 26135683 - 26135590
Alignment:
Q  115 tttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    |||||||||||| ||| || || |||||||| ||||| ||||||||||| || ||||| ||  || ||||||| |  |||||||| ||||||||    
T  26135683 tttctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacaggattcccagcaatatgtattgcactctgattatcaca 26135590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 33461935 - 33461886
Alignment:
Q  114 ttttctctaacaatatgacagtcaatctccaaatgtttggttctctcatg 163  Q
    |||||||| |||| ||||||||| || ||||||||||| |||||||||||    
T  33461935 ttttctctgacaagatgacagtctatttccaaatgtttagttctctcatg 33461886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 93759 - 93852
Alignment:
Q  115 tttctctaacaatatgacagtcaatctccaaatgtttggttctctcatggaagacagggttggcaacaatatgaagggcactctggttatcaca 208  Q
    |||||||||||| ||| || || |||||||| ||||| ||||||||||| || ||||| ||  || ||||||| |  |||||||| ||||||||    
T  93759 tttctctaacaaaatggcaatctatctccaagtgttttgttctctcatgaaacacaggattcccagcaatatgtattgcactctgattatcaca 93852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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