View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7699_low_36 (Length: 214)

Name: NF7699_low_36
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7699_low_36
NF7699_low_36
[»] chr4 (14 HSPs)
chr4 (25-186)||(4335410-4335571)
chr4 (25-184)||(4123794-4123953)
chr4 (25-184)||(4320477-4320633)
chr4 (48-184)||(4344713-4344849)
chr4 (48-184)||(4361144-4361280)
chr4 (43-185)||(6498399-6498541)
chr4 (61-185)||(6753026-6753150)
chr4 (43-185)||(6545321-6545463)
chr4 (43-170)||(6588069-6588196)
chr4 (82-185)||(6621419-6621522)
chr4 (43-185)||(6728472-6728614)
chr4 (131-173)||(4133386-4133428)
chr4 (43-185)||(6651133-6651275)
chr4 (43-185)||(6815536-6815678)
[»] chr6 (21 HSPs)
chr6 (45-161)||(5066569-5066685)
chr6 (45-173)||(5073783-5073911)
chr6 (45-173)||(5102489-5102617)
chr6 (45-161)||(5157503-5157619)
chr6 (50-173)||(5344939-5345062)
chr6 (39-184)||(5096775-5096920)
chr6 (50-171)||(5243793-5243914)
chr6 (45-173)||(5181802-5181930)
chr6 (45-173)||(5354489-5354617)
chr6 (50-173)||(5176817-5176940)
chr6 (48-161)||(5128295-5128408)
chr6 (45-161)||(5426000-5426116)
chr6 (50-173)||(5278644-5278767)
chr6 (50-179)||(5690039-5690168)
chr6 (84-161)||(5350484-5350561)
chr6 (48-161)||(5370661-5370774)
chr6 (45-173)||(5447665-5447793)
chr6 (45-143)||(5434143-5434241)
chr6 (50-141)||(5397060-5397151)
chr6 (60-186)||(5383391-5383517)
chr6 (45-173)||(5284264-5284392)
[»] chr5 (5 HSPs)
chr5 (45-158)||(8877702-8877815)
chr5 (60-182)||(20838701-20838823)
chr5 (60-140)||(12599062-12599142)
chr5 (60-182)||(20812346-20812468)
chr5 (61-143)||(15803019-15803101)
[»] chr7 (2 HSPs)
chr7 (48-173)||(36213707-36213832)
chr7 (60-185)||(18935452-18935577)
[»] scaffold0294 (1 HSPs)
scaffold0294 (45-172)||(8775-8902)
[»] chr3 (5 HSPs)
chr3 (45-110)||(47986747-47986812)
chr3 (45-110)||(47996034-47996099)
chr3 (45-110)||(48005321-48005386)
chr3 (45-110)||(48014606-48014671)
chr3 (50-143)||(6905806-6905899)
[»] chr8 (7 HSPs)
chr8 (60-164)||(3262637-3262740)
chr8 (60-182)||(31175916-31176038)
chr8 (50-116)||(3407323-3407389)
chr8 (50-143)||(3391536-3391629)
chr8 (60-143)||(3314966-3315049)
chr8 (61-143)||(3364277-3364359)
chr8 (60-141)||(3325010-3325091)
[»] scaffold0286 (1 HSPs)
scaffold0286 (82-185)||(6725-6828)
[»] scaffold0813 (1 HSPs)
scaffold0813 (43-185)||(4699-4841)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 4335571 - 4335410
Alignment:
Q  25 gtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagaga 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4335571 gtttgaacagctggtgagacattatttgttggtaccatccaagaccaaattatagaaggaaacacatcacgggagaatccttcatacccacacaaagaga 4335472  T
Q  125 tatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtattatct 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4335471 tatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtgttatct 4335410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 4123794 - 4123953
Alignment:
Q  25 gtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagaga 124  Q
    |||||||||||||||| || |||||||||||||| |||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||| ||| |    
T  4123794 gtttgaacagcgggtgggagattatttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgagagaatccttcatatccacacagagaaa 4123893  T
Q  125 tatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtattat 184  Q
    || | ||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||    
T  4123894 taaatccaatgctttttgaccttactaccgaaaagggcacttttgttatagcagtattat 4123953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 4320477 - 4320633
Alignment:
Q  25 gtttgaacagcgggtgagacattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagaga 124  Q
    ||||||| ||||||||| | |||||||| ||    ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| ||| |    
T  4320477 gtttgaaaagcgggtgacagattatttggtga---catccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacagagaaa 4320573  T
Q  125 tatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtattat 184  Q
    || | ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  4320574 taaatccaatgctttttgaccttactaatgaaaagggaacttttgttataccagtattat 4320633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 4344849 - 4344713
Alignment:
Q  48 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 147  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||| | ||||||| ||||||| ||    
T  4344849 atttgttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttttgacctt 4344750  T
Q  148 actactgaaaagggcacttttgttataccagtattat 184  Q
    |||||||||||||| |||||||||||| |||| ||||    
T  4344749 actactgaaaagggtacttttgttatagcagtgttat 4344713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 4361280 - 4361144
Alignment:
Q  48 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 147  Q
    ||||||||||  |||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||| | ||||||| ||||||  ||    
T  4361280 atttgttggtgacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcatatccacacaaagaaataaatccaatgcgttttgatctt 4361181  T
Q  148 actactgaaaagggcacttttgttataccagtattat 184  Q
    || | ||||||||| ||||||||||||||||| ||||    
T  4361180 acaattgaaaagggtacttttgttataccagtgttat 4361144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 6498399 - 6498541
Alignment:
Q  43 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 142  Q
    |||||||||| ||||  ||||||||||| ||||| ||| ||||| |||||||| || ||||||| | | ||||  ||||| || || |||||||||||||    
T  6498399 acattatttgatggtgacatccaagaccgaatgagagaaggaaatacatcacgtgaaaatcctttaaatccacctaaagaaatgtatccaatgctttttg 6498498  T
Q  143 actttactactgaaaagggcacttttgttataccagtattatc 185  Q
    |  |||||| ||||||||| |||||||||||| |||| |||||    
T  6498499 atcttactattgaaaagggaacttttgttatagcagtcttatc 6498541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 6753150 - 6753026
Alignment:
Q  61 atccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagg 160  Q
    |||||||||| ||||| ||| || || |||||||| || ||||||||| | ||||  ||||| ||||| |||||||||||  |  |||||| ||||||||    
T  6753150 atccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttcaatcttactattgaaaagg 6753051  T
Q  161 gcacttttgttataccagtattatc 185  Q
    |||||||||||||| |||| |||||    
T  6753050 gcacttttgttatagcagtcttatc 6753026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 6545321 - 6545463
Alignment:
Q  43 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 142  Q
    |||||||||| ||||  || |||||||| ||||| ||| || || |||||||| || ||||||||| | ||||  ||||| ||||| |||||||||||      
T  6545321 acattatttgatggtgacagccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatgcttttca 6545420  T
Q  143 actttactactgaaaagggcacttttgttataccagtattatc 185  Q
    |  | |||| |||||||||||||||||||||| |||| |||||    
T  6545421 atctaactattgaaaagggcacttttgttatagcagtcttatc 6545463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 6588069 - 6588196
Alignment:
Q  43 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 142  Q
    |||||||||| |||   ||||||||||| ||||| ||| || || |||||||| || ||||||||| | ||||| ||||| ||||| |||||||||||      
T  6588069 acattatttgatggcgacatccaagaccgaatgagagaagggaatacatcacgtgaaaatccttcaaagccacaaaaagaaatatatccaatgcttttca 6588168  T
Q  143 actttactactgaaaagggcacttttgt 170  Q
     | |||||| |||||| |||||||||||    
T  6588169 tccttactattgaaaatggcacttttgt 6588196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 6621419 - 6621522
Alignment:
Q  82 ggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtat 181  Q
    ||||||||||| || || ||||||||| | ||||| ||||| ||||| |||||| |||| ||   ||||| ||||||||| |||||||||||| |||| |    
T  6621419 ggaaacacatcccgtgaaaatccttcaaatccacataaagaaatatatccaatgtttttagatcgtactattgaaaagggaacttttgttatagcagtct 6621518  T
Q  182 tatc 185  Q
    ||||    
T  6621519 tatc 6621522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 6728614 - 6728472
Alignment:
Q  43 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 142  Q
    |||||||||| |||   ||||||||||||||  | ||| || || |||||||| || ||||||||| | ||||  ||||| ||||| ||||| |||||      
T  6728614 acattatttgatggcgacatccaagaccaaacaagagaagggaatacatcacgtgaaaatccttcaaagccacgaaaagaaatatatccaatacttttca 6728515  T
Q  143 actttactactgaaaagggcacttttgttataccagtattatc 185  Q
    |  |||||| |||||| ||||||||||||||| |||| |||||    
T  6728514 atcttactattgaaaatggcacttttgttatagcagtcttatc 6728472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 4133386 - 4133428
Alignment:
Q  131 caatgctttttgactttactactgaaaagggcacttttgttat 173  Q
    |||||||||||||| || | |||||||||||||||||||||||    
T  4133386 caatgctttttgaccttgcgactgaaaagggcacttttgttat 4133428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 6651275 - 6651133
Alignment:
Q  43 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 142  Q
    |||||| ||| ||||  ||||||||||| || || | | ||||| ||||| || || ||||||||| | ||||| | ||| ||||| |||||| || ||     
T  6651275 acattagttgatggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatccaatgtttctta 6651176  T
Q  143 actttactactgaaaagggcacttttgttataccagtattatc 185  Q
    |  |||||| |||||| ||||||||||||||| |||| |||||    
T  6651175 atcttactattgaaaacggcacttttgttatagcagtcttatc 6651133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 6815678 - 6815536
Alignment:
Q  43 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 142  Q
    |||||||||| ||||  ||||||||| | || || ||| | ||| |||||||| |  ||||||||| | ||||  ||||| ||||| |||||||||||      
T  6815678 acattatttgatggtgacatccaagagcgaacgagagaagaaaatacatcacgtgtaaatccttcaaagccacctaaagaaatatatccaatgcttttca 6815579  T
Q  143 actttactactgaaaagggcacttttgttataccagtattatc 185  Q
    |  |||| |||||||| ||||||||| ||||| |||| |||||    
T  6815578 atcttaccactgaaaatggcactttttttatagcagtcttatc 6815536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 5066569 - 5066685
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    |||||||||||||  |||||||||| |||||||||| |||||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||||    
T  5066569 attatttgttggtgacatccaagacaaaatgatagatggaaacacatcacgcgagaatccttcatagccgcacaaagagatgtatccaatgctttttgac 5066668  T
Q  145 tttactactgaaaaggg 161  Q
     ||||||||||||||||    
T  5066669 cttactactgaaaaggg 5066685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 5073783 - 5073911
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    ||||||||| |||  |||||||||||||||||| || || ||||||||||| |||||||||||||| || |||||||| ||||| ||||||||||| |||    
T  5073783 attatttgtcggtgacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcatagccgcacaaagaaatatatccaatgcttttcgac 5073882  T
Q  145 tttactactgaaaagggcacttttgttat 173  Q
     |||||||||||||||||||| |||||||    
T  5073883 cttactactgaaaagggcactcttgttat 5073911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 5102489 - 5102617
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    |||||||||||||  |||||||||||| |||||||| |||||||||||| | || | ||||||||| ||||| | ||||||||| |||||||||||||||    
T  5102489 attatttgttggtgacatccaagaccagatgatagatggaaacacatcatgtgaaagtccttcatagccacatagagagatatatccaatgctttttgac 5102588  T
Q  145 tttactactgaaaagggcacttttgttat 173  Q
     |||||||||||||||||||| |||||||    
T  5102589 cttactactgaaaagggcactgttgttat 5102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 5157503 - 5157619
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || ||||||||||| || | ||||||||| || |||||||||||||||    
T  5157503 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcatagccgcccaaagagatgtatccaatgctttttgac 5157602  T
Q  145 tttactactgaaaaggg 161  Q
     ||||||||||||||||    
T  5157603 cttactactgaaaaggg 5157619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 5345062 - 5344939
Alignment:
Q  50 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 149  Q
    ||||||||  |||||||||||| |||||||| ||||| ||||| || |||||||||||||| ||||||| ||| ||||| ||||||||||||||| ||||    
T  5345062 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcatagccacacagagaaatatatccaatgctttttgaccttac 5344963  T
Q  150 tactgaaaagggcacttttgttat 173  Q
    |||| ||||||| |||||||||||    
T  5344962 tactaaaaagggaacttttgttat 5344939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 39 - 184
Target Start/End: Complemental strand, 5096920 - 5096775
Alignment:
Q  39 tgagacattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctt 138  Q
    ||||| |||||||||||||  || ||||||||| ||||||||||||||||||||||| || ||||||||||  ||||| | ||| || || |||||||||    
T  5096920 tgagagattatttgttggtgacaaccaagaccagatgatagacggaaacacatcacgtgaaaatccttcatggccacatagagaaatgtatccaatgctt 5096821  T
Q  139 tttgactttactactgaaaagggcacttttgttataccagtattat 184  Q
    |||||| |||||||||||||||| ||| || |||| ||||| ||||    
T  5096820 tttgaccttactactgaaaagggtactctttttattccagtgttat 5096775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 5243793 - 5243914
Alignment:
Q  50 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 149  Q
    ||||||||  |||||||||||| |||||||| ||||| ||||| || || ||||||||||| ||||||||||| ||||| || |||||||||||| ||||    
T  5243793 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgaaaatccttcatagccacacaaagaaatatatccgatgctttttgaccttac 5243892  T
Q  150 tactgaaaagggcacttttgtt 171  Q
    |||||||||||||||| |||||    
T  5243893 tactgaaaagggcactcttgtt 5243914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 5181802 - 5181930
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    ||||||||| |||  |||||||||||||||||| |  |||||||||||| | |||||||||||||| |||||||| || |||||  |||||||||| |||    
T  5181802 attatttgtcggtgacatccaagaccaaatgatcgctggaaacacatcatgtgagaatccttcatatccacacaaggaaatatatgcaatgcttttggac 5181901  T
Q  145 tttactactgaaaagggcacttttgttat 173  Q
    |||||||||||||| |||||| |||||||    
T  5181902 tttactactgaaaacggcactcttgttat 5181930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 5354489 - 5354617
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| ||     
T  5354489 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgagaatccttcatagccacataaagaaatatatccaatgcttttggaa 5354588  T
Q  145 tttactactgaaaagggcacttttgttat 173  Q
     | |||| ||| ||||| ||| |||||||    
T  5354589 ctaactattgagaagggtactcttgttat 5354617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 5176940 - 5176817
Alignment:
Q  50 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 149  Q
    ||||||||  |||||||||||||||||| || ||||| | |||||| |||||||||||||| || ||||||||||| || ||||||||||||||| ||||    
T  5176940 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttac 5176841  T
Q  150 tactgaaaagggcacttttgttat 173  Q
    || ||| ||||||||| |||||||    
T  5176840 tattgacaagggcactcttgttat 5176817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 5128295 - 5128408
Alignment:
Q  48 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 147  Q
    ||||||||||  |||||||||||| |||||||| |||||||||||||  || ||||||||||  || |||| ||||||||| ||||||||||||||| ||    
T  5128295 atttgttggtgacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcatggccgcacagagagatatatccaatgctttttgacctt 5128394  T
Q  148 actactgaaaaggg 161  Q
    ||||||||||||||    
T  5128395 actactgaaaaggg 5128408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 5426116 - 5426000
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    |||||||||||||  |||||||||||||||||| |  |||||||||||||| || ||||||||||| || ||||||||||| || |||||||||| ||||    
T  5426116 attatttgttggtgacatccaagaccaaatgatcgctggaaacacatcacgtgaaaatccttcatagccgcacaaagagatgtatccaatgctttgtgac 5426017  T
Q  145 tttactactgaaaaggg 161  Q
     |||| |||||||||||    
T  5426016 attaccactgaaaaggg 5426000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 5278767 - 5278644
Alignment:
Q  50 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 149  Q
    ||||||||  |||||||||||||||||| || ||||| | |||||| |||||||||||||| || ||||||||||| || ||||||||||||||| ||||    
T  5278767 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttac 5278668  T
Q  150 tactgaaaagggcacttttgttat 173  Q
    ||  || ||||||||| |||||||    
T  5278667 tatagacaagggcactcttgttat 5278644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 5690039 - 5690168
Alignment:
Q  50 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttac 149  Q
    ||||||||  ||||||||||||||||||||| ||||| | |||||| |||||||||||||  || |||| ||| ||||| ||||||||||||||| ||||    
T  5690039 ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcatgtccgcacagagaaatatacccaatgctttttgaccttac 5690138  T
Q  150 tactgaaaagggcacttttgttataccagt 179  Q
     | ||||||||||||  ||||||| |||||    
T  5690139 aattgaaaagggcacacttgttattccagt 5690168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 5350561 - 5350484
Alignment:
Q  84 aaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaaggg 161  Q
    |||||||||||| || ||||||||||| || ||||||||||| || ||||||||||||||| ||||||||||||||||    
T  5350561 aaacacatcacgtgaaaatccttcatagccgcacaaagagatgtatccaatgctttttgaccttactactgaaaaggg 5350484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 5370774 - 5370661
Alignment:
Q  48 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 147  Q
    ||||||||||  ||||||||||||||||||||| ||||| |||||| | || |||||| |||  |||||||| || || || |||||||||||||||  |    
T  5370774 atttgttggtgacatccaagaccaaatgatagatggaaaaacatcatgtgaaaatcctacatggccacacaatgaaatgtatccaatgctttttgaccgt 5370675  T
Q  148 actactgaaaaggg 161  Q
    ||||||||||||||    
T  5370674 actactgaaaaggg 5370661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 173
Target Start/End: Complemental strand, 5447793 - 5447665
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    ||||||| |||||  ||||||||||| ||| ||||| |||||||||||| | ||| |||||||| | || |||||||| ||||| |||||||| || |||    
T  5447793 attatttcttggtgacatccaagaccgaataatagatggaaacacatcatgcgaggatccttcaaatccgcacaaagaaatatatccaatgctcttcgac 5447694  T
Q  145 tttactactgaaaagggcacttttgttat 173  Q
     | ||||| |||||||||||| |||||||    
T  5447693 ctaactaccgaaaagggcactgttgttat 5447665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 5434241 - 5434143
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 143  Q
    |||||||||||||  ||||||||||  ||||||| | ||||| | |||  | |||||||||||||| || |||||||||||||| ||||||||||||||    
T  5434241 attatttgttggtgacatccaagactgaatgataaatggaaataaatcgtgtgagaatccttcataaccgcacaaagagatatatccaatgctttttga 5434143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 5397151 - 5397060
Alignment:
Q  50 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgcttttt 141  Q
    ||||||||  |||||||||| |||||||||  |||||||| ||||  || ||||||||||| || |||||||||||| | ||||||||||||    
T  5397151 ttgttggtgacatccaagacgaaatgatagctggaaacacttcacatgaaaatccttcatatccgcacaaagagataaatccaatgcttttt 5397060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 5383517 - 5383391
Alignment:
Q  60 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 159  Q
    ||||||||||  |||||| || |||||||||||||| |||||||||||||  || |||||||| |||||  |||| ||||||||| |||  | ||||| |    
T  5383517 catccaagacttaatgatggatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactttttgaccttaaaattgaaagg 5383418  T
Q  160 ggcacttttgttataccagtattatct 186  Q
    || ||| |||||||  |||| ||||||    
T  5383417 ggaactcttgttattgcagtgttatct 5383391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 5284264 - 5284392
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    ||||||||||| |  |||||| ||| |||| ||  | ||||||||||| |  || | ||| ||||| || |||||||  ||||| ||||||||||| |||    
T  5284264 attatttgttgctgacatccatgacaaaattattaatggaaacacatcgcttgaaagtccctcataaccgcacaaagcaatatatccaatgcttttcgac 5284363  T
Q  145 tttactactgaaaagggcacttttgttat 173  Q
     |||||||||||||||||||| |||||||    
T  5284364 cttactactgaaaagggcactcttgttat 5284392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 8877815 - 8877702
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || ||||||||||| || |||||||| ||||| |||||||||||||||    
T  8877815 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgcgaaaatccttcatagccgcacaaagaaatatatccaatgctttttgac 8877716  T
Q  145 tttactactgaaaa 158  Q
     |||||| ||||||    
T  8877715 cttactaatgaaaa 8877702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 20838823 - 20838701
Alignment:
Q  60 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 159  Q
    ||||||||||||||||| ||| ||||| |||||| | || ||||||||||| ||||| |  || ||||| ||||||||||||||  || ||| |||| ||    
T  20838823 catccaagaccaaatgagagaaggaaaaacatcatgtgataatccttcatatccacatagtgatatatatccaatgctttttgatcttgctattgaatag 20838724  T
Q  160 ggcacttttgttataccagtatt 182  Q
    ||||||| | | |||||||||||    
T  20838723 ggcacttgtttgataccagtatt 20838701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 12599062 - 12599142
Alignment:
Q  60 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttt 140  Q
    ||||||||||||| ||| ||| ||||| |||||||| || ||||||||||| |||||||| || ||||| |||||||||||    
T  12599062 catccaagaccaattgagagaaggaaaaacatcacgtgataatccttcatatccacacaaggatatatatccaatgctttt 12599142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 20812468 - 20812346
Alignment:
Q  60 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 159  Q
    ||||||||||||||||| ||| ||||| |||||||| || |||||||| || ||||| |  || |||||  |||||||||||||  || ||| |||| ||    
T  20812468 catccaagaccaaatgagagaaggaaaaacatcacgtgataatccttcgtatccacatagtgatatatatgcaatgctttttgatcttgctattgaatag 20812369  T
Q  160 ggcacttttgttataccagtatt 182  Q
    ||||||| | | |||||||||||    
T  20812368 ggcacttgtttgataccagtatt 20812346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 15803101 - 15803019
Alignment:
Q  61 atccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 143  Q
    |||||||||| ||||| ||| ||||| |||||| | || ||||||| ||| ||||| | ||| ||||| ||||||||||||||    
T  15803101 atccaagacctaatgagagaaggaaaaacatcatgtgataatcctttatatccacatagagatatatatccaatgctttttga 15803019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 36213707 - 36213832
Alignment:
Q  48 atttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgacttt 147  Q
    ||||||||||  ||||||||||||||||||||| |||||||||||| | |||||||||||||| || |||||||| |||||  | |||||||| ||  ||    
T  36213707 atttgttggtgacatccaagaccaaatgatagatggaaacacatcatgtgagaatccttcatagccgcacaaagatatataagcgatgcttttagatctt 36213806  T
Q  148 actactgaaaagggcacttttgttat 173  Q
    ||||||||||| |||||| |||||||    
T  36213807 actactgaaaatggcactcttgttat 36213832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 18935577 - 18935452
Alignment:
Q  60 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 159  Q
    ||||||||||  ||| || || |||||||||| ||| |  ||||||||| | |||||||  || ||| | ||||||||||||||  ||||||||| ||||    
T  18935577 catccaagactgaataattgaaggaaacacattacgtgctaatccttcaaatccacacagtgaaataaatccaatgctttttgatcttactactgcaaag 18935478  T
Q  160 ggcacttttgttataccagtattatc 185  Q
    |||||| |||||| | |||| |||||    
T  18935477 ggcactcttgttacagcagtcttatc 18935452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 8775 - 8902
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgac 144  Q
    ||||||||||||   ||||||||||  ||||||||| |||||||||||||| |||||||||||||  || |||||||| |||||  |||| |||||||||    
T  8775 attatttgttggagacatccaagacttaatgatagatggaaacacatcacgtgagaatccttcatggccgcacaaagaaatatatacaatactttttgac 8874  T
Q  145 tttactactgaaaagggcacttttgtta 172  Q
     |||||| ||||||||||||| ||||||    
T  8875 cttactattgaaaagggcactcttgtta 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 47986747 - 47986812
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 110  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  47986747 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47986812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 47996034 - 47996099
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 110  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  47996034 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47996099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 48005321 - 48005386
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 110  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  48005321 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48005386  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 48014606 - 48014671
Alignment:
Q  45 attatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcata 110  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  48014606 attatttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48014671  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 6905806 - 6905899
Alignment:
Q  50 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 143  Q
    ||||||||  ||||||||||||||||| ||| ||||| | |||||| || ||||||||||| || || |  || |||||  |||||||||||||    
T  6905806 ttgttggtgacatccaagaccaaatgagagaaggaaaaatatcacgtgataatccttcatatccgcatagggatatatacacaatgctttttga 6905899  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 164
Target Start/End: Original strand, 3262637 - 3262740
Alignment:
Q  60 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 159  Q
    ||||||||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| |  || ||||| ||||||||||||||  |||||| |||| ||    
T  3262637 catccaagaccaaatgatagagggaaaaacatcacgtgaaaatcc-tcatatccacatagggatatatatccaatgctttttgatcttactattgaatag 3262735  T
Q  160 ggcac 164  Q
    |||||    
T  3262736 ggcac 3262740  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 31176038 - 31175916
Alignment:
Q  60 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaag 159  Q
    ||||||||||||||||| ||| ||||| || ||||  || ||||||||||| ||||| | ||| |||||  |||||||||||||  || ||| |||| ||    
T  31176038 catccaagaccaaatgagagaaggaaaaacgtcacatgataatccttcatatccacatagagatatatatgcaatgctttttgatcttgctattgaatag 31175939  T
Q  160 ggcacttttgttataccagtatt 182  Q
    ||||||| | | |||||||||||    
T  31175938 ggcacttgtttgataccagtatt 31175916  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 3407323 - 3407389
Alignment:
Q  50 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccaca 116  Q
    ||||||||  ||||||||||||||||||||| ||||| |||||||| || ||||||| ||| |||||    
T  3407323 ttgttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataatccttgatatccaca 3407389  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 3391536 - 3391629
Alignment:
Q  50 ttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 143  Q
    ||||||||  ||||||||||| ||||| ||| ||||| |||| | | || ||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  3391536 ttgttggtgacatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatgctttttga 3391629  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 3315049 - 3314966
Alignment:
Q  60 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 143  Q
    ||||||||||||||||||||| ||||| |||||||| || || ||||||||  |||| |  || ||||| |||||| |||||||    
T  3315049 catccaagaccaaatgatagaaggaaaaacatcacgtgataaaccttcatattcacatagggatatatatccaatgttttttga 3314966  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 3364359 - 3364277
Alignment:
Q  61 atccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttga 143  Q
    |||||||||| ||||| ||| ||||| |||| | | || ||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  3364359 atccaagacctaatgagagaaggaaaaacatgatgtgataatccttcatatccacatagagatatatatccaatgctttttga 3364277  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 3325010 - 3325091
Alignment:
Q  60 catccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgcttttt 141  Q
    ||||||||||||||||||||| ||||| |||||  | || | ||||||||| ||||| |  || ||||| ||||||||||||    
T  3325010 catccaagaccaaatgatagaaggaaaaacatcgtgtgatagtccttcatatccacagagggatatatatccaatgcttttt 3325091  T

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Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 6828 - 6725
Alignment:
Q  82 ggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttgactttactactgaaaagggcacttttgttataccagtat 181  Q
    ||||||||||| || || ||||||||| | ||||| ||||| ||||| |||||| |||| ||   ||||| ||||||||| |||||||||||| |||| |    
T  6828 ggaaacacatcccgtgaaaatccttcaaatccacataaagaaatatatccaatgtttttagatcgtactattgaaaagggaacttttgttatagcagtct 6729  T
Q  182 tatc 185  Q
    ||||    
T  6728 tatc 6725  T

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Target: scaffold0813 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 4699 - 4841
Alignment:
Q  43 acattatttgttggtaccatccaagaccaaatgatagacggaaacacatcacgggagaatccttcatacccacacaaagagatatagccaatgctttttg 142  Q
    |||||| ||| ||||  ||||||||||| || || | | ||||| ||||| || || ||||||||| | ||||| | ||| ||||| |||||| || ||     
T  4699 acattagttgatggtgacatccaagaccgaacgagaaaaggaaatacatctcgtgaaaatccttcaaagccacatagagaaatatatccaatgtttctta 4798  T
Q  143 actttactactgaaaagggcacttttgttataccagtattatc 185  Q
    |  |||||| |||||| ||||||||||||||| |||| |||||    
T  4799 atcttactattgaaaacggcacttttgttatagcagtcttatc 4841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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