View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_6 (Length: 654)
Name: NF7699_low_6
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 16 - 654
Target Start/End: Original strand, 6916191 - 6916825
Alignment:
| Q |
16 |
tggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgct |
115 |
Q |
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| T |
6916191 |
tggacatccagttcaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgct |
6916290 |
T |
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| Q |
116 |
tttagagagtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtg |
215 |
Q |
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| T |
6916291 |
tttagagagtgttacacagcttccagaccagttatattagaacctgttatgct----gaactgaaagtaccaacagaatttcagggagctgttgctggtg |
6916386 |
T |
|
| Q |
216 |
acctcaacaagagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgtccctcttaacaatatgtttgggtattc |
315 |
Q |
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| T |
6916387 |
acctcaacaagagaaaaggtgtgattgttggcaatgttcaggacgaagattattctgtcattacagctcatgtgcctcttaacaatatgtttgggtattc |
6916486 |
T |
|
| Q |
316 |
tacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaac |
415 |
Q |
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| T |
6916487 |
tacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaac |
6916586 |
T |
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| Q |
416 |
acatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaatttattgggggtagttatctagaaaaaagaattgtagttttg |
515 |
Q |
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| T |
6916587 |
acatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaattttttgggggtagttatctggaaaaaagaattgtggttttg |
6916686 |
T |
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| Q |
516 |
gttcannnnnnngggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactccaatgtttttattgggaa |
615 |
Q |
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| T |
6916687 |
gttcatttttttgggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttggtgtcactccaatgtttttattgggaa |
6916786 |
T |
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| Q |
616 |
acttgatttaatattaaatttatcatatatttgcgtttt |
654 |
Q |
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| T |
6916787 |
acttgatttaacattaaatttatcatatatttgcgtttt |
6916825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 4e-43; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 15038160 - 15038055
Alignment:
| Q |
16 |
tggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctatctatgct |
115 |
Q |
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| T |
15038160 |
tggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctatctatgct |
15038061 |
T |
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| Q |
116 |
tttaga |
121 |
Q |
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|||||| |
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| T |
15038060 |
tttaga |
15038055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 338 - 446
Target Start/End: Complemental strand, 15036049 - 15035941
Alignment:
| Q |
338 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcag |
437 |
Q |
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| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatacaagggcaataaggcac |
15035950 |
T |
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| Q |
438 |
ctgaatgat |
446 |
Q |
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| T |
15035949 |
ctgaatgat |
15035941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
123 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaa |
222 |
Q |
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| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
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| Q |
223 |
caag |
226 |
Q |
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| T |
15037828 |
caag |
15037825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
287 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
341 |
Q |
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| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
226 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
288 |
Q |
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| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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