View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7699_low_7 (Length: 619)

Name: NF7699_low_7
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7699_low_7
NF7699_low_7
[»] chr6 (5 HSPs)
chr6 (287-603)||(3710316-3710632)
chr6 (9-203)||(3712290-3712484)
chr6 (206-255)||(3710787-3710836)
chr6 (254-283)||(3710747-3710776)
chr6 (152-197)||(33806691-33806736)
[»] chr7 (1 HSPs)
chr7 (114-201)||(37502170-37502257)
[»] chr5 (2 HSPs)
chr5 (110-202)||(26675284-26675376)
chr5 (110-202)||(26946892-26946984)
[»] chr1 (4 HSPs)
chr1 (133-196)||(18894615-18894678)
chr1 (128-186)||(35621313-35621371)
chr1 (152-205)||(12436955-12437008)
chr1 (110-186)||(13360321-13360397)
[»] chr3 (1 HSPs)
chr3 (130-184)||(7672356-7672410)
[»] chr8 (2 HSPs)
chr8 (130-199)||(14479062-14479131)
chr8 (111-200)||(40680930-40681019)
[»] chr4 (2 HSPs)
chr4 (110-187)||(10462828-10462905)
chr4 (130-187)||(52701021-52701078)
[»] chr2 (4 HSPs)
chr2 (129-186)||(11281369-11281426)
chr2 (152-201)||(13478786-13478835)
chr2 (130-194)||(3019959-3020023)
chr2 (109-201)||(29926904-29926996)


Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 287 - 603
Target Start/End: Complemental strand, 3710632 - 3710316
Alignment:
Q  287 ttagagttagttattcatgattttggtaaggagtttgtaatgttttgtaaagtcattgcttgtcttttaattttctaaccagtcaattctataggtcagt 386  Q
    ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  3710632 ttagagtgagttactcatgattttgataaggagtttgtaatgttttgtaaagtcattgtttgtcttttaattttctaaccagtcaattctataggttagt 3710533  T
Q  387 ggattgattcgatcgaaatgcacttcataaaagttacgatagcatgaagacaaaggaaaatgaagatttgtagtctagacgacatgggaaatttttgtcc 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3710532 ggattgattcgatcgaaatgcacttcataaaagttacgatagcatgaagacaaaggaaaatgaagatttgcagtctagacgacatgggaaatttttgtcc 3710433  T
Q  487 caagcacaaatcaaaggcgaaaagcacataaataatgaagaaaacaaggaaaatagtcattgtccaatgcaccccatgcatgcaaccacgatccccgcac 586  Q
    ||| |||||||||||||||||||||||||||||||||||| |||  |||||||||| |||| |||||||||||||||| |||||| ||||||||||||||    
T  3710432 caaacacaaatcaaaggcgaaaagcacataaataatgaaggaaatgaggaaaatagccattctccaatgcaccccatgaatgcaatcacgatccccgcac 3710333  T
Q  587 atattgaaagacgaaaa 603  Q
    |||||||||||||||||    
T  3710332 atattgaaagacgaaaa 3710316  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 3712484 - 3712290
Alignment:
Q  9 gaagaatatccaggaaatgaaaattgctagttatgccagcaaaataaaaacatataaatattttattggcaaaattgcnnnnnnnnnaaaaaccaaaatg 108  Q
    |||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  3712484 gaagaaaatccaggaaatgaaaattgctagccatgccagcaaaataaaaacatataaatattttattggcaaaattgcattttttttttaaaccaaaatg 3712385  T
Q  109 agtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcattcc 203  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||    
T  3712384 agtaatagtcaattttgtttctgaatgtgtaacgaatagttataataatttttgaatgtattgaaattctaaaatagtcattgattatgcattcc 3712290  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 3710787 - 3710836
Alignment:
Q  206 catgagacattcttctatggtcacaatcataaaagaatagtgttagggca 255  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||||||    
T  3710787 catgagacattcttctatggttacaagcctaaaagaatagtgttagggca 3710836  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 283
Target Start/End: Original strand, 3710747 - 3710776
Alignment:
Q  254 catagacacattcttgcaattagacatata 283  Q
    ||||||||||||||||||||||||||||||    
T  3710747 catagacacattcttgcaattagacatata 3710776  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 33806691 - 33806736
Alignment:
Q  152 aataatctttgaatatatctaaattctaaaatagtcattgattatg 197  Q
    ||||||| || ||| |||| ||||||||||||||||||||||||||    
T  33806691 aataatcctttaatgtatcgaaattctaaaatagtcattgattatg 33806736  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 201
Target Start/End: Original strand, 37502170 - 37502257
Alignment:
Q  114 tagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcatt 201  Q
    ||||||| ||||| |||||||||||||| |||||  | |||||||||| |||||||| ||||| ||||||| ||| ||||||||||||    
T  37502170 tagtcaactttgtctctgaatgtgtaacgaataaccacaataatcttttaatatatcaaaattttaaaataatcaatgattatgcatt 37502257  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 26675376 - 26675284
Alignment:
Q  110 gtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcattc 202  Q
    |||||||||| ||| |||  |||||||||||  | |||| | |||||||||| ||| |||| | |||||||||||||| |||||| |||||||    
T  26675376 gtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgcattc 26675284  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 26946984 - 26946892
Alignment:
Q  110 gtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcattc 202  Q
    |||||||||| ||| |||  |||||||||||  | |||| | |||||||||| ||| |||| | |||||||||||||| |||||| |||||||    
T  26946984 gtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgcattc 26946892  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 18894615 - 18894678
Alignment:
Q  133 atgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattat 196  Q
    ||||||||||| || | |||||| |||||||||||||| ||||| |||| ||||| ||||||||    
T  18894615 atgtgtaacaagtagtcataatagtctttgaatatatcgaaattttaaagtagtcgttgattat 18894678  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 35621313 - 35621371
Alignment:
Q  128 tctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagt 186  Q
    ||||||||||||| || || |||||||||||||| ||| ||||  ||||||||||||||    
T  35621313 tctgaatgtgtaataagtagttataataatcttttaatgtatcataattctaaaatagt 35621371  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 12437008 - 12436955
Alignment:
Q  152 aataatctttgaatatatctaaattctaaaatagtcattgattatgcattccat 205  Q
    |||||||||||| |||||| |||||  |||||||| ||||||| ||||||||||    
T  12437008 aataatctttgattatatcaaaatttcaaaatagttattgattgtgcattccat 12436955  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 13360397 - 13360321
Alignment:
Q  110 gtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagt 186  Q
    |||||||||| ||| |||||||||| ||| |||| || | | ||||||||||||||| ||| |||||  ||||||||    
T  13360397 gtaatagtcattttggtttctgaatttgttacaagtagtcacaataatctttgaatacatcgaaatttcaaaatagt 13360321  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 7672356 - 7672410
Alignment:
Q  130 tgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaata 184  Q
    ||||||||||| ||||| |||||||||||||| ||| |||  |||||||||||||    
T  7672356 tgaatgtgtaataaatagttataataatcttttaatgtattaaaattctaaaata 7672410  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 14479062 - 14479131
Alignment:
Q  130 tgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgca 199  Q
    ||||||||||| ||||| ||||||||||  || ||| |||  |||||||||||||||  |||||||||||    
T  14479062 tgaatgtgtaagaaatagttataataataatttaatgtattaaaattctaaaatagtatttgattatgca 14479131  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 40681019 - 40680930
Alignment:
Q  111 taatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcat 200  Q
    ||||||| | ||| || |||||||||||||||| |||||| |||| || |||  | |||| |||||| ||||||||||||| || |||||    
T  40681019 taatagttattttagtctctgaatgtgtaacaagtaattacaatagtccttgggtgtatcgaaattccaaaatagtcattggttgtgcat 40680930  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 10462905 - 10462828
Alignment:
Q  110 gtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtc 187  Q
    |||||||||||||| |||| ||| |||||||||| || | |||||| || || ||| |||| ||||| ||||||||||    
T  10462905 gtaatagtcaatttagtttgtgattgtgtaacaagtagtcataatagtcatttaatgtatcaaaattgtaaaatagtc 10462828  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 52701078 - 52701021
Alignment:
Q  130 tgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtc 187  Q
    ||||||||||||||||||| ||||||||  || | | |||||||||| ||||||||||    
T  52701078 tgaatgtgtaacaaataatcataataattcttaactgtatctaaattttaaaatagtc 52701021  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 11281369 - 11281426
Alignment:
Q  129 ctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagt 186  Q
    |||||||||||||||||||| | |||||| ||| | |||||| ||||| |||||||||    
T  11281369 ctgaatgtgtaacaaataatcacaataatatttcattatatcaaaattttaaaatagt 11281426  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 13478835 - 13478786
Alignment:
Q  152 aataatctttgaatatatctaaattctaaaatagtcattgattatgcatt 201  Q
    ||||||||||||||||||| ||||| |||||||||  |||||| ||||||    
T  13478835 aataatctttgaatatatcaaaattttaaaatagtttttgattgtgcatt 13478786  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 3019959 - 3020023
Alignment:
Q  130 tgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgatt 194  Q
    ||||||| |||  |||| |||||||||||||| |||||||  ||||| |||||||||| ||||||    
T  3019959 tgaatgtataaagaatagttataataatctttcaatatattgaaattataaaatagtctttgatt 3020023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 29926996 - 29926904
Alignment:
Q  109 agtaatagtcaattttgtttctgaatgtgtaacaaataattataataatctttgaatatatctaaattctaaaatagtcattgattatgcatt 201  Q
    ||||||||||| ||| || | ||||||||||| ||||| ||  ||||||| ||  || |||| ||||| ||||||||||| ||||| ||||||    
T  29926996 agtaatagtcattttagtctttgaatgtgtaataaatagttgcaataatcctttgatgtatcaaaattttaaaatagtcaatgattgtgcatt 29926904  T

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