View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_8 (Length: 618)
Name: NF7699_low_8
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 13 - 600
Target Start/End: Complemental strand, 3569805 - 3569208
Alignment:
| Q |
13 |
agggaaaaaatgaagaggtcgagagactagttagctatttcaaaataatttaggagttatgaagctattacaaacaactcatcgttttctaatacatgtt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569805 |
agggaaaaaatgaagaggtcgagagactagttagctatttcaaaataatttaggagttatgaagctattacaaacaactcatcgttttctaatacatgtt |
3569706 |
T |
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| Q |
113 |
agcagcatgtctaacgaccaaactcagatgggcttatttaatagtcgtcagtgaaattgaagactatttagctatttaataaaaattgcagagcaagttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569705 |
agcagcatgtctaacgaccaaactcagatgggcttatttaatagtcgtcagtgaaattgaagactatttagctatttaataaaaattgcagagcaagttg |
3569606 |
T |
|
| Q |
213 |
atctatgaaaatgatgaaaataatccagggactatcaagtctattcactctgaaaaaatcaggtggagacaagttacaaacaagctcaatatttgt---- |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3569605 |
atctatgaaaatgatgaaaataatccagggactatcaagtctattcactctgaaaaaatcaggtggagacaagttacaatcaagctcaatatttgttttg |
3569506 |
T |
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| Q |
309 |
------gcccagttatataatttgattatgtttttccttgaatttttgcacaagaggagtgtatcgatcttataatctgnnnnnnngcaaggaacacgcc |
402 |
Q |
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| T |
3569505 |
atacagttccagttatataatttgattatgtttttccttgaatttttgcacaagaggagtgtatgcatcttataatctgaaaaaaagcaaggaacacacc |
3569406 |
T |
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| Q |
403 |
cnnnnnnnggggtgttcagattataaaatccgaactacttatttgtttggattttataatccgaattggtggaaaactcannnnnnnncctcgaaaagag |
502 |
Q |
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| T |
3569405 |
ctttttttggggtgttcagattataaaatccgagctacttatttgtttggattttataatccgaattggtggaaaactcattttttttccccgaaaatag |
3569306 |
T |
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| Q |
503 |
gggaaaaactcttttcggattataacatatgaaatgctcaaggacatttttagaataaaatatggtactcaagaaatggataaagtgaacaaaaattt |
600 |
Q |
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| T |
3569305 |
gggaaaaactcttttcggattataacatatgaaatgctcaaggacatttttagaataaaatatggtactcaagaaatggataaagtgaacaaaaattt |
3569208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 411 - 476
Target Start/End: Original strand, 9641281 - 9641346
Alignment:
| Q |
411 |
ggggtgttcagattataaaatccgaactacttatttgtttggattttataatccgaattggtggaa |
476 |
Q |
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| T |
9641281 |
ggggtcttcaaattataaaattcgaattacttatttatttggattttagaatccgaattggtggaa |
9641346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 29050599 - 29050648
Alignment:
| Q |
413 |
ggtgttcagattataaaatccgaactacttatttgtttggattttataat |
462 |
Q |
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| T |
29050599 |
ggtgttcataatataaaatccaaactacttatttgtttggattttataat |
29050648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 470
Target Start/End: Complemental strand, 16504209 - 16504174
Alignment:
| Q |
435 |
aactacttatttgtttggattttataatccgaattg |
470 |
Q |
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| T |
16504209 |
aactacttatttgtttggattttataatctgaattg |
16504174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 54452960 - 54453004
Alignment:
| Q |
414 |
gtgttcagattataaaatccgaactacttatttgtttggatttta |
458 |
Q |
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| T |
54452960 |
gtgttcggattataaaatccgaaatacttatttttttggatttta |
54453004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 478
Target Start/End: Original strand, 46635339 - 46635406
Alignment:
| Q |
411 |
ggggtgttcagattataaaatccgaactacttatttgtttggattttataatccgaattggtggaaaa |
478 |
Q |
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| T |
46635339 |
ggggttttcagattatagaattcaaactactcatttattcggattttataatcagaattggtgaaaaa |
46635406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 482
Target Start/End: Complemental strand, 1941840 - 1941771
Alignment:
| Q |
412 |
gggtgttcagattataaaatccgaactacttatttgtttggattttataatccgaattggtggaaaactca |
482 |
Q |
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| T |
1941840 |
gggtgttcgtattacaaaatccgaactacttacttattcggattttgtaatccgaatcggt-gaaaactca |
1941771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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