View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7699_low_9 (Length: 594)
Name: NF7699_low_9
Description: NF7699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7699_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Original strand, 33631257 - 33631824
Alignment:
| Q |
8 |
agtagcagagagggatgctgagttgttcggtgtgtcatttccaatgccctggactactagagggacatatcacccccaattttgctgataactttctcca |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33631257 |
agtagcacagagggatgctgagttgttcggtgtgtcatttccaatgccctggactactagagggacatatcacccccaatttcgctgataactttctcca |
33631356 |
T |
|
| Q |
108 |
ccttgaccagcatatctaacaacatcaaaatggtacatcagtattttggacttcaaatttaagtagaccatcgccatacaatattaagaaaataaatgta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33631357 |
ccttgaccagcatatctaacaacatcaaaatggtacatcagtattttggacttcaaatttaagtagaccatcgccatacaatattaagaaaacaaatgta |
33631456 |
T |
|
| Q |
208 |
tgtagcatgcacatgcatctaataatgcgcatgcatcagaagtgtgattaaaaacttttacctatacatacaaggaacatacaaagtacaggatgcatac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33631457 |
tgtagcatgcacatgcatctaataatgcgcatgcatcagaagtgtgattaaaaacttttacctatacatacaaggaacataaaaagtacaggatgcatac |
33631556 |
T |
|
| Q |
308 |
aaaactttatattcagaccaaagaagattaatgattttttactaatattccactctagaatggaagtgnnnnnnngacaagaactaaataaataaaatgg |
407 |
Q |
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| T |
33631557 |
aaaactttatattcagaccaaagaagattaatgattttttactcatgttccactctagaatggaagtgaaaaaaagacaagaactaaataaataaaatgg |
33631656 |
T |
|
| Q |
408 |
tgcgtcatgtttaatcaatgtaagagagagaagcaataagaaacgtgctaccttggaaggaagaatcttccatgtatttctgcatcaaaggaaaagaata |
507 |
Q |
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| T |
33631657 |
tgcgtcatgtttaatcaatgtaagagagagaagcaataagaaacgtgctaccttggaaggaagaatcttccatgtatttctgcatcaaaggaaaagaata |
33631756 |
T |
|
| Q |
508 |
tcaggagtaacaaataatcagttaataagatgtacttctcaaatattcacaacttagagaaagcttat |
575 |
Q |
| |
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| T |
33631757 |
tcaggagtaacaaataatcagttaataagatgtacttctcaaatattcacaacttagagaaagcttat |
33631824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 575
Target Start/End: Complemental strand, 29194704 - 29194166
Alignment:
| Q |
21 |
gatgctgagttgttcggtgtgtcatttccaatgccctggactactagagggacatatcacccccaattttgctgataactttctccaccttgaccagcat |
120 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29194704 |
gatgctaagttgctcggtgtgtcatttccaatgccctggactactagagggacatatcacccccaatttcgctgataactttctccaccttgaccagcat |
29194605 |
T |
|
| Q |
121 |
atctaacaacatcaaaatggtacatcagtattttggacttcaaatttaagtagaccatcgccatacaatattaagaaaataaatgtatgtagcatgcaca |
220 |
Q |
| |
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| T |
29194604 |
atctaacaacatgaaaatggtacattagtattttggacttcaaatttaagtaaaccatcaccatacaatattaaccaaa-aaatggatata----gcaca |
29194510 |
T |
|
| Q |
221 |
tgcatctaataatgcgcatgcatcagaagtgtgattaaaaacttttacctatacatacaaggaacatacaaagtacaggatgcatacaaaactttatatt |
320 |
Q |
| |
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||| |||||||||||| ||| |||| |||||||| || |||| |||||||||| |||||||| ||| || |||||||||||||| |
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| T |
29194509 |
agca-------------atgcatcagaagcgtgcttaacaactttta--tacacatttaaggaacataaaaagtacatgatatat-caaaactttatatt |
29194426 |
T |
|
| Q |
321 |
cagaccaaagaagattaatgattttttactaatattccactctagaatggaagtgnnnnnnngacaagaactaaataaataaaatggtgcgtcatgttta |
420 |
Q |
| |
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|| |||||||||||| | |||||| | | || |||||||||||||| |||| | ||||||||||||||| ||||||||| ||| |||||||| |
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| T |
29194425 |
caagccaaagaagattcagaatttttcattcatgttccactctagaattgaagagaaaaaaagacaagaactaaatatataaaatggcgcgacatgttta |
29194326 |
T |
|
| Q |
421 |
atcaatgtaagagagagaagcaataagaaa-----cgtgctaccttggaaggaagaatcttccatgtatttctgcatcaaaggaaaagaatatcaggagt |
515 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29194325 |
atcaatgtaagagagagaagaaataagaaagagggagtgctaccttggaaggaagaatcttccatgtatttctgcatcaaaggaaaagaatatcagaagt |
29194226 |
T |
|
| Q |
516 |
aacaaataatcagttaataagatgtacttctcaaatattcacaacttagagaaagcttat |
575 |
Q |
| |
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| T |
29194225 |
aacaaataatcagttaagaagatgtacttctcaaatattcataacttagagaaagcttat |
29194166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 384 - 573
Target Start/End: Complemental strand, 26659213 - 26659022
Alignment:
| Q |
384 |
acaagaactaaataaataaaatggtgcgtcatgtttaatcaatgtaagagagagaagcaataagaaac-----gtgctaccttggaaggaagaatcttcc |
478 |
Q |
| |
|
|||||||||||||||||||||||| | | || |||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
26659213 |
acaagaactaaataaataaaatggcgtgacacgtttaatcaaggtaagagagagaaacaataagaaagagggagtgctaccttggaaggaagaatcttcc |
26659114 |
T |
|
| Q |
479 |
atgtatttctgcatcaaaggaaaagaatatcaggagtaacaaataatcagttaataagatgtacttctcaaatattcacaacttagagaaagctt |
573 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |
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| T |
26659113 |
atgtatttctgcatcaaaggaaaagaatatcaagagcaacaaataatca---attaagatgtacttctcaaatattcataacttagagaaagctt |
26659022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 238 - 338
Target Start/End: Complemental strand, 26659379 - 26659277
Alignment:
| Q |
238 |
atgcatcagaagtgtgattaaaaacttttacctataca--tacaaggaacatacaaagtacaggatgcatacaaaactttatattcagaccaaagaagat |
335 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||| || |||||||||| ||||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
26659379 |
atgcatcagaagcgtgattaacaacttttacctatacacatataaggaacataaaaagtacaggatgcatacaaaacattagattcaagccaaagaagat |
26659280 |
T |
|
| Q |
336 |
taa |
338 |
Q |
| |
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||| |
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|
| T |
26659279 |
taa |
26659277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 26663304 - 26663215
Alignment:
| Q |
28 |
agttgttcggtgtgtcatttccaatgccctggactactagagg-------gacatatcacccccaattttgctgataactttctccacct |
110 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
26663304 |
agttgttcagtgtgtcatttccaatgccttggactactagagtctagagagacatatcacccccaatttcgctgataactttctccacct |
26663215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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