View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7700_high_1 (Length: 439)
Name: NF7700_high_1
Description: NF7700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7700_high_1 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 2 - 425
Target Start/End: Complemental strand, 45744537 - 45744119
Alignment:
| Q |
2 |
tcgagtttggtggttaataacacaagataagttaagttgcattcttgtaggtcacttggattgagcactgggagtatgatgagagtattgttcaccaact |
101 |
Q |
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| T |
45744537 |
tcgagtatgttggttaataacacaagataagtt-----gcactcttgtaggtcacttggattgagcactgggagtatgatgagagtattgttcaccaact |
45744443 |
T |
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| Q |
102 |
ctatcgtccgttgctcatttccggttttggatttggcgctcatagatggatcgccaccctccaaaggcagtgtgaaggcttggctatcctcatgtcctct |
201 |
Q |
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| T |
45744442 |
ctatcgtccgttgctcatttccggttttggatttggcgctcatagatggatcgccaccctccaaaggcagtgtgaaggcttggctatcctcatgtcctct |
45744343 |
T |
|
| Q |
202 |
tccatctcaaatgatgatcacaccggtaaaacaaatcacatgcatgaatttaaatcgttatattttctaatcacttgttaactactaattaaatggtgta |
301 |
Q |
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| T |
45744342 |
tccatctcaaatgatgatcacaccggtaaaacaaatcacatgcatgaatttaaatcgttatattttctaatcatttgttaactactaattaaatggtgta |
45744243 |
T |
|
| Q |
302 |
aatttggcattttgattttgcagccttgagccaagctggtcgaagaagcatgttgaagctggcacaacgtatgaccaacaacttctgttccggggtttgt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45744242 |
aatttggcattttgattttgcagccttgagccaagctggtcgaagaagcatgttgaagctggcacaacgtatgaccaacaacttctgttccggggtttgt |
45744143 |
T |
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| Q |
402 |
gcttcatctgctagaaaatgggac |
425 |
Q |
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| T |
45744142 |
gcttcatctgctagaaaatgggac |
45744119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 12323213 - 12323156
Alignment:
| Q |
346 |
gaagcatgttgaagctggcacaacgtatgaccaacaacttctgttccggggtttgtgc |
403 |
Q |
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| T |
12323213 |
gaagcatgctgaagcttgcacaacgaatgactaacaacttctgtgccggtgtctgtgc |
12323156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 7697 - 7597
Alignment:
| Q |
76 |
tatgatgagagtattgttcaccaactctatcgtccgttgctcatttccggttttggatttggcgctcatagatggatcgccaccctccaaaggcagtgtg |
175 |
Q |
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| T |
7697 |
tatgatgagagtgttgtccaccaagcctatcgtccattggttaattccggcatggcatttggtgctcatagatgggttgcaactctccagaggcagtgtg |
7598 |
T |
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| Q |
176 |
a |
176 |
Q |
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| T |
7597 |
a |
7597 |
T |
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