View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7700_high_3 (Length: 396)
Name: NF7700_high_3
Description: NF7700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7700_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 128 - 346
Target Start/End: Complemental strand, 10641980 - 10641762
Alignment:
| Q |
128 |
cctatatagagaataaagagttgacatctacaacctcatatatgatcaaaatactacatatgagtcaaatggtgttttcgcggaatttcagcattgcact |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
10641980 |
cctatatagagaataaagagttgacatctacaacctcatatatgatcaaaatactacatatgggtcatatggtgttttcgcggaatttcagcattgcact |
10641881 |
T |
|
| Q |
228 |
aaagcaaagaaagaaaacaaaactacgcgaaatgtttggttaacgaagataacgagagattaaaaaccttattgaattcaagaacaattgactaaaaata |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10641880 |
aaagcaaagaaagaaaacaaaactacgcgaaatgtttggttaacgaagataatgagagattaaaaaccttattgaattcaagaacaattgactaaaaata |
10641781 |
T |
|
| Q |
328 |
attcaaaaccaacaccaaa |
346 |
Q |
| |
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||||||||||||||||||| |
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| T |
10641780 |
attcaaaaccaacaccaaa |
10641762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 29632966 - 29633014
Alignment:
| Q |
345 |
aactcgatggaaaactagaacaataacgacaacaacaagtattatctac |
393 |
Q |
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| T |
29632966 |
aactccatggaaaactagaacaataacaacaacaacaagtattttctac |
29633014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 29633079 - 29633127
Alignment:
| Q |
345 |
aactcgatggaaaactagaacaataacgacaacaacaagtattatctac |
393 |
Q |
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| T |
29633079 |
aactccatggaaaactagaacaataacaacaacaacaagtattttctac |
29633127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 346
Target Start/End: Complemental strand, 10641191 - 10641139
Alignment:
| Q |
295 |
cttattgaattcaagaacaattgactaaaaat-aattcaaaaccaacaccaaa |
346 |
Q |
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| T |
10641191 |
cttattgaattcaagaacaatttattaaatataaattcaaaaccaacaccaaa |
10641139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 28756517 - 28756622
Alignment:
| Q |
211 |
aatttcagcattgcactaaagcaaagaaagaaaacaaaactacgcgaaatgtttggttaacgaagataacgagagattaaaaaccttattgaattcaaga |
310 |
Q |
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||||||| || | ||||||| |||| ||||||||||||| ||||| ||||| |||||||| ||||||||||||||| | || | |||||||||||||||| |
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| T |
28756517 |
aatttcatcactacactaaaccaaataaagaaaacaaaattacgcaaaatgcttggttaatgaagataacgagagaatgaatagcttattgaattcaaga |
28756616 |
T |
|
| Q |
311 |
acaatt |
316 |
Q |
| |
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|||||| |
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|
| T |
28756617 |
acaatt |
28756622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 34333610 - 34333556
Alignment:
| Q |
211 |
aatttcagcattgcactaaagcaaagaaagaaaacaaaactacgcgaaatgtttg |
265 |
Q |
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||||||| || |||| |||| |||||||||||||||||||||| ||| ||||||| |
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|
| T |
34333610 |
aatttcaacactgcattaaaccaaagaaagaaaacaaaactacacgatatgtttg |
34333556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 4087843 - 4087815
Alignment:
| Q |
166 |
tatatgatcaaaatactacatatgagtca |
194 |
Q |
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| T |
4087843 |
tatatgatcaaaatactacatatgagtca |
4087815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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