View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7700_high_4 (Length: 289)
Name: NF7700_high_4
Description: NF7700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7700_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 43301824 - 43302078
Alignment:
| Q |
18 |
gaaagtggtttggttatttattcagtgattgtgtttgtttcataaacaatgtttgatgttatcattggtttttgtttttctctcttttggctttggccta |
117 |
Q |
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| T |
43301824 |
gaaagtggtttggttatttattcagtgattgtgtttgtttcataaacaatgtttgatgttatcattggtttttgtttttctctcttttggctttggccta |
43301923 |
T |
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| Q |
118 |
cagaacattggttctttaggttgtgatgatgaaaggaaggaccagtctaatgatgaaacatttgaagatgaaaatgattcttttggaactgagacatcat |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43301924 |
cagaacattggttctttaggttgtgatgataaaaggaaggaccagtctaatgatgaaacatttgaagatgaaaatgattcttttggaactgagacatcat |
43302023 |
T |
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| Q |
218 |
gttgtaatggtgaaaataaactctgtggatgtcacttctgtttgctatcaccacc |
272 |
Q |
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| T |
43302024 |
gttgtaatggtgaaaataaactctgtggatgtcacttctgtttgctatcaccacc |
43302078 |
T |
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