View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7700_low_3 (Length: 404)
Name: NF7700_low_3
Description: NF7700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7700_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 36 - 392
Target Start/End: Original strand, 5440748 - 5441102
Alignment:
| Q |
36 |
tcattccttgaagtatgtgtaaccaaaattctagttgagcataaaatgtgaaaattaaaacatttcataaaactacatattttcatcacttttagacaga |
135 |
Q |
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| T |
5440748 |
tcattccttgaagtatgtgtaaccaaaattctagttgagcataaaatgtgaaaattaaaacatttcataaaactacatattttcatcacttttagacaga |
5440847 |
T |
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| Q |
136 |
caggaagaacaattcataaagattgttgaaaatcctccactggcccagaaaaagataaaaatatattacagattcttttgatgcattttatttgcaaaat |
235 |
Q |
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| T |
5440848 |
caggaagaataattcataaagattgttgaaaatcctcgactggcccagaaaaagataaaaatat--tagagattcttttgatgcattttatttgcaaaat |
5440945 |
T |
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| Q |
236 |
gttatcttaggacatgattgaatttccttttttactagtgatgggagaacttgagacacattccaactacattctatttcatgctagaaatctaaaccca |
335 |
Q |
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| T |
5440946 |
gttatcttaggacatgattgaatttcctttttaactagtgatgggagaacttgagacacattccaactacattctatttcatgctagaaatctaaaccca |
5441045 |
T |
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| Q |
336 |
ttcatgtccttacaaatgaaaaaatgttcatgtcgtggtcccatagcaaaagatatt |
392 |
Q |
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| T |
5441046 |
ttcatgtccttacaaatgaaaaaatgttcatgtcgtggtcccatagcaaaagatatt |
5441102 |
T |
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