View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7700_low_5 (Length: 394)

Name: NF7700_low_5
Description: NF7700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7700_low_5
NF7700_low_5
[»] chr7 (7 HSPs)
chr7 (183-342)||(13416994-13417153)
chr7 (249-367)||(1986092-1986210)
chr7 (254-358)||(15572052-15572156)
chr7 (260-357)||(14076520-14076617)
chr7 (260-357)||(14386548-14386645)
chr7 (262-349)||(18514958-18515045)
chr7 (288-344)||(29431174-29431230)
[»] chr8 (2 HSPs)
chr8 (84-154)||(22773700-22773770)
chr8 (38-66)||(22773788-22773816)
[»] chr6 (5 HSPs)
chr6 (244-367)||(6943086-6943209)
chr6 (249-367)||(6935355-6935473)
chr6 (249-358)||(6921487-6921596)
chr6 (254-367)||(6954661-6954774)
chr6 (244-367)||(6948012-6948135)
[»] chr4 (1 HSPs)
chr4 (280-349)||(53774685-53774754)
[»] chr5 (1 HSPs)
chr5 (260-336)||(18964981-18965057)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 183 - 342
Target Start/End: Original strand, 13416994 - 13417153
Alignment:
Q  183 aatcataagaaaaacaaagacaaccattcaacatagaaagagctggatgaagtcttggacgatcacgtagatcttcgtcacaacatcgaggtagcaacaa 282  Q
    ||||||||||||||||||||||| ||||||||||||||||||  ||| ||||| ||||| |||| ||||| ||||| |||||||||||||||||||||||    
T  13416994 aatcataagaaaaacaaagacaatcattcaacatagaaagagtaggaggaagtattggaggatcgcgtagctcttcctcacaacatcgaggtagcaacaa 13417093  T
Q  283 ctgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaat 342  Q
    ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  13417094 ctgtgtatatgtctcagtccccaactcaaccgagataatcacaaattgttcaattgtaat 13417153  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 1986092 - 1986210
Alignment:
Q  249 gtagatcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattctt 348  Q
    |||||||||| |||||| ||||||| ||||||||||| |||||| |||| ||||||||  |||| |||||||| |||| |||||||| ||||| ||||||    
T  1986092 gtagatcttcatcacaatatcgagggagcaacaactgtgtatatctctctgtccccaaatcaagtgagataattacaagttgttcaactgtaagattctt 1986191  T
Q  349 caaatgacaactatatcgg 367  Q
    |||||||||| ||||||||    
T  1986192 caaatgacaattatatcgg 1986210  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 15572052 - 15572156
Alignment:
Q  254 tcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattcttcaaat 353  Q
    ||||| ||||||||||||||||||| | | ||  ||||||| || ||||||||  |||||||||| ||||||||||||||||| |||| |||||||||||    
T  15572052 tcttcatcacaacatcgaggtagcatcgattgtctatatgtttctgtccccaaatcaagcgagattatcacaaattgttcaatcgtaagattcttcaaat 15572151  T
Q  354 gacaa 358  Q
    |||||    
T  15572152 gacaa 15572156  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 14076617 - 14076520
Alignment:
Q  260 tcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattcttcaaatgaca 357  Q
    ||||||||| |||| || ||||| || ||||||||||||||||||||  |||| ||||||||||||||||| ||||| || | ||| ||| |||||||    
T  14076617 tcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattccaatgaca 14076520  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 14386645 - 14386548
Alignment:
Q  260 tcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattcttcaaatgaca 357  Q
    ||||||||| |||| || ||||| || ||||||||||||||||||||  |||| ||||||||||||||||| ||||| || | ||| ||| |||||||    
T  14386645 tcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattccaatgaca 14386548  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 18514958 - 18515045
Alignment:
Q  262 acaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattcttc 349  Q
    |||| ||||||| ||||| ||||| ||||||||||| |||  |||  ||||||||| ||| ||| |||||||||| |||| |||||||    
T  18514958 acaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgagacaataacatattgttcaatggtaagattcttc 18515045  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 29431174 - 29431230
Alignment:
Q  288 tatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatat 344  Q
    |||||||||||||||||||  ||||||| | ||| ||||| || |||||||||||||    
T  29431174 tatatgtctcagtccccaaatcaagcgaaagaataacaaactgctcaattgtaatat 29431230  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 22773770 - 22773700
Alignment:
Q  84 tggagcctttcactaaagaaagagcccattgtaactggggctttgttatataactgaaaaatagacgaact 154  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||    
T  22773770 tggagcctttcactaaagaaagagcccgctataactggggctttgttatataactgaaaaatagacgaact 22773700  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 22773816 - 22773788
Alignment:
Q  38 aagttataaatggtcaagctatatctaac 66  Q
    |||||||||||||||||||||||||||||    
T  22773816 aagttataaatggtcaagctatatctaac 22773788  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 244 - 367
Target Start/End: Original strand, 6943086 - 6943209
Alignment:
Q  244 atcacgtagatcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaata 343  Q
    |||| |||| ||||| ||||||||| |||| |||||||| |  ||||||||||| ||||||||  |||| ||||| ||||| |||||||||| ||||| |    
T  6943086 atcatgtagctcttcatcacaacattgagggagcaacaattttgtatatgtctctgtccccaaatcaagtgagatcatcacgaattgttcaactgtaaga 6943185  T
Q  344 ttcttcaaatgacaactatatcgg 367  Q
    ||||||||||||||| ||||||||    
T  6943186 ttcttcaaatgacaattatatcgg 6943209  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 6935355 - 6935473
Alignment:
Q  249 gtagatcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattctt 348  Q
    |||| ||||| |||||||||||||| |||||||| |  ||| ||||||| ||||||||  |||| ||||| ||||| |||||||| | ||||| ||||||    
T  6935355 gtagctcttcatcacaacatcgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagatcatcacgaattgttcgactgtaagattctt 6935454  T
Q  349 caaatgacaactatatcgg 367  Q
    |||||||||| ||||||||    
T  6935455 caaatgacaattatatcgg 6935473  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 358
Target Start/End: Original strand, 6921487 - 6921596
Alignment:
Q  249 gtagatcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattctt 348  Q
    |||| ||||| |||||||||||||| |||||||| || ||||||||||| ||||||||  |||| ||||| ||||||||||||||||   ||| ||| ||    
T  6921487 gtagctcttcatcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagattttt 6921586  T
Q  349 caaatgacaa 358  Q
    ||||||||||    
T  6921587 caaatgacaa 6921596  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 367
Target Start/End: Original strand, 6954661 - 6954774
Alignment:
Q  254 tcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattcttcaaat 353  Q
    ||||| ||||||||||| || ||||||||||| ||||||||||| |||| ||   |||| ||||| |||||||||| ||||| ||||| |||||||||||    
T  6954661 tcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaat 6954760  T
Q  354 gacaactatatcgg 367  Q
    |||||  |||||||    
T  6954761 gacaataatatcgg 6954774  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 367
Target Start/End: Original strand, 6948012 - 6948135
Alignment:
Q  244 atcacgtagatcttcgtcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaata 343  Q
    |||| |||| ||||| |||||||||||||| ||||||||| | |||||| |||| ||||||||  |||| ||||| ||||||| ||||||||   ||| |    
T  6948012 atcatgtagctcttcatcacaacatcgagggagcaacaaccgtgtatatctctctgtccccaaatcaagtgagatcatcacaagttgttcaaccataaga 6948111  T
Q  344 ttcttcaaatgacaactatatcgg 367  Q
    |||||||||||||||  |||||||    
T  6948112 ttcttcaaatgacaataatatcgg 6948135  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 53774754 - 53774685
Alignment:
Q  280 caactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaattgtaatattcttc 349  Q
    |||||| ||||||||||| ||| ||||  ||||||| |||||||||||||||||  |||||| |||||||    
T  53774754 caactgtgtatatgtctctgtctccaaatcaagcgaaataatcacaaattgttcggttgtaagattcttc 53774685  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 336
Target Start/End: Original strand, 18964981 - 18965057
Alignment:
Q  260 tcacaacatcgaggtagcaacaactgagtatatgtctcagtccccaacacaagcgagataatcacaaattgttcaat 336  Q
    ||||||||| |||| || |||||||| ||| |||||||  ||||||   |||| ||||||||||||||||| |||||    
T  18964981 tcacaacatggagggagtaacaactgtgtaaatgtctccatccccagatcaagtgagataatcacaaattgctcaat 18965057  T

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