View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7700_low_6 (Length: 374)
Name: NF7700_low_6
Description: NF7700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7700_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Original strand, 35128805 - 35129154
Alignment:
| Q |
16 |
aatttagagttagaggttgatggttcaaatgattcacagaagccggtctctgaaacttctgaactgattgatggaagaggttttcaagatgaaccaattg |
115 |
Q |
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| T |
35128805 |
aatttagagttagaggttgatggttcaaatgattcacagaagccggtctctgaaacttctgaactgattgatggaagaggttttcaagatgaaccaattg |
35128904 |
T |
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| Q |
116 |
gtgatttgcggatagaaatgcaggttattaatatattgtcagctgaggactggcctgaggttactgatgacaaaattcatacagatgaaaatgttgagga |
215 |
Q |
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| T |
35128905 |
gtgatttgcggatagaaatgcaggttattaatatattgtcagctgaggactcgcctgaggttactgatgacaaaattcatacagatgaaaatgttgagga |
35129004 |
T |
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| Q |
216 |
ggaacttgagcctattatcctgcagaaaggggagttggatgatatttctgaccttgtgaatcaagaaatgcagttgcatgaatataataaaataatggac |
315 |
Q |
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| T |
35129005 |
ggaacttgagcctattatcctgcagaaaggggagttggatgatatttctgaccttgtgaatcaagaaatgcagttgcatggatataataaaataatggac |
35129104 |
T |
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| Q |
316 |
tcattagatgcagatgctacagaaattgctgatgaaagtgagcttcattt |
365 |
Q |
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| T |
35129105 |
tcattagatgcagatgctacagaaattgctgatgaaagtgagcttcattt |
35129154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 35128451 - 35128644
Alignment:
| Q |
16 |
aatttagagttagaggttgatggttcaaatgattcacagaagccggtctctgaaacttctgaactgattgatggaagaggttttcaagatgaaccaattg |
115 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
35128451 |
aatttagagttagaggttgatggctcaaatgattcacagcagccggtcactgaaacttctgaactgattgatggaagaagttttcgagatgaaccaattg |
35128550 |
T |
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| Q |
116 |
gtgatttgcggatagaaatgcaggttattaatatattgtcagctgaggactggcctgaggttactgatgacaaaattcatacagatgaaaatgt |
209 |
Q |
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| T |
35128551 |
gcgatttgatgatagaaacaccggttctcaatatattggtagctgaggacttgtctgaggttaccaatgacaaaattgatacaaatgaaaatgt |
35128644 |
T |
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