View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7700_low_7 (Length: 370)

Name: NF7700_low_7

Description: NF7700

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7700_low_7

[»] chr7 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 145; E-Value: 3e-76

Query Start/End: Original strand, 17 - 260

Target Start/End: Complemental strand, 10005985 - 10005740

Alignment:

Q	17	acatagtgaggcaattgctacaacattaaaattccacaataagata--tttaaaacatacaaattttcattnnnnnnnnnnnnntttataagtaaaaagt	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	10005985	acatagtgaggcaattgctacaacattaaaattccacaataagattattttaaaacatacaaattttcattaaaaaaataataatttataaataaaaagt	10005886	T

Q	115	acactaatgaaatctagataccaaatattgattcttacattgacacaaaattacaagtaaattccacaataatataatattacatactagatacttcctt	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10005885	acactaatgaaatctagataccaaatattgattcttacattgacacaaaattacaagtaaattccacaataatataatattacatactagatacttcctt	10005786	T

Q	215	cnnnnnnnnnnnnntacatactatagatactaaatattcattcttt	260	Q
		\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	10005785	caaaaaaaaaaaaatacatactatagatactaaatattgattcttt	10005740	T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 59; E-Value: 6e-25

Query Start/End: Original strand, 305 - 363

Target Start/End: Complemental strand, 28725292 - 28725234

Alignment:

Q	305	tacaaagatctttgtacaaagacttacatttgttttttgattaatccttgttcttctca	363	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28725292	tacaaagatctttgtacaaagacttacatttgttttttgattaatccttgttcttctca	28725234	T

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