View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7700_low_8 (Length: 291)

Name: NF7700_low_8
Description: NF7700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7700_low_8
NF7700_low_8
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-98)||(23523-23620)
[»] chr8 (12 HSPs)
chr8 (1-85)||(17973623-17973707)
chr8 (1-80)||(25579740-25579819)
chr8 (1-80)||(39837490-39837569)
chr8 (4-80)||(17664568-17664644)
chr8 (1-80)||(30938340-30938419)
chr8 (1-72)||(39845541-39845612)
chr8 (1-75)||(4839715-4839789)
chr8 (4-80)||(17683724-17683800)
chr8 (1-80)||(1407001-1407080)
chr8 (5-71)||(26873541-26873607)
chr8 (13-69)||(23090611-23090667)
chr8 (13-69)||(25700273-25700329)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-80)||(121286-121365)
[»] chr6 (17 HSPs)
chr6 (1-80)||(25991908-25991987)
chr6 (1-80)||(25550353-25550432)
chr6 (1-85)||(13825761-13825845)
chr6 (1-80)||(30824457-30824536)
chr6 (1-71)||(23925393-23925463)
chr6 (1-80)||(5004119-5004198)
chr6 (1-80)||(25506469-25506548)
chr6 (1-80)||(33298143-33298221)
chr6 (1-98)||(5994757-5994855)
chr6 (1-74)||(35091610-35091683)
chr6 (2-70)||(26526640-26526708)
chr6 (1-80)||(11279895-11279974)
chr6 (9-72)||(15391547-15391610)
chr6 (211-278)||(20532403-20532470)
chr6 (13-66)||(15140726-15140779)
chr6 (13-66)||(23985047-23985100)
chr6 (13-66)||(28127457-28127510)
[»] chr4 (10 HSPs)
chr4 (1-80)||(12996534-12996613)
chr4 (1-80)||(27343619-27343698)
chr4 (1-80)||(4523608-4523687)
chr4 (1-80)||(8094210-8094289)
chr4 (1-80)||(8103016-8103095)
chr4 (1-71)||(52295662-52295732)
chr4 (1-80)||(21532233-21532311)
chr4 (1-47)||(12402910-12402956)
chr4 (13-66)||(19647352-19647405)
chr4 (13-66)||(19772260-19772313)
[»] chr2 (21 HSPs)
chr2 (1-98)||(35037914-35038011)
chr2 (1-80)||(14582983-14583062)
chr2 (1-80)||(15944485-15944564)
chr2 (1-80)||(15953000-15953079)
chr2 (1-80)||(35138651-35138730)
chr2 (1-80)||(35146987-35147066)
chr2 (1-80)||(38168285-38168364)
chr2 (1-80)||(41233772-41233851)
chr2 (3-80)||(20621578-20621655)
chr2 (1-80)||(42565857-42565936)
chr2 (1-80)||(42574481-42574560)
chr2 (1-45)||(17687361-17687405)
chr2 (1-71)||(20372251-20372320)
chr2 (14-68)||(35303808-35303862)
chr2 (1-69)||(18989312-18989380)
chr2 (1-54)||(25483659-25483712)
chr2 (1-54)||(25491265-25491318)
chr2 (13-66)||(27683381-27683434)
chr2 (1-38)||(44372763-44372800)
chr2 (1-38)||(44388674-44388711)
chr2 (211-243)||(20372078-20372110)
[»] chr7 (9 HSPs)
chr7 (1-80)||(10439995-10440074)
chr7 (1-74)||(18304326-18304399)
chr7 (1-80)||(4952325-4952404)
chr7 (1-80)||(13831558-13831637)
chr7 (1-80)||(13839589-13839668)
chr7 (1-80)||(12978513-12978592)
chr7 (14-69)||(1955691-1955746)
chr7 (13-66)||(20114066-20114119)
chr7 (13-66)||(38247996-38248049)
[»] chr5 (25 HSPs)
chr5 (1-80)||(20372841-20372920)
chr5 (1-80)||(20398563-20398642)
chr5 (1-98)||(23349986-23350083)
chr5 (1-80)||(29186206-29186285)
chr5 (1-80)||(43597974-43598053)
chr5 (1-80)||(43603466-43603545)
chr5 (1-80)||(43608958-43609037)
chr5 (1-80)||(1728087-1728166)
chr5 (1-80)||(24956774-24956853)
chr5 (1-80)||(24965237-24965316)
chr5 (1-80)||(28843998-28844077)
chr5 (1-80)||(28852608-28852687)
chr5 (22-68)||(23028007-23028053)
chr5 (21-67)||(23037923-23037969)
chr5 (9-75)||(31410956-31411022)
chr5 (3-70)||(31421849-31421916)
chr5 (13-66)||(21988620-21988673)
chr5 (13-66)||(21997264-21997317)
chr5 (13-66)||(23606368-23606421)
chr5 (13-66)||(23635076-23635129)
chr5 (13-66)||(23829022-23829075)
chr5 (13-66)||(23837763-23837816)
chr5 (13-66)||(31550458-31550511)
chr5 (13-69)||(21852579-21852635)
chr5 (13-69)||(21869103-21869159)
[»] chr3 (18 HSPs)
chr3 (1-80)||(50824410-50824489)
chr3 (1-80)||(50851371-50851450)
chr3 (1-98)||(14538514-14538612)
chr3 (1-71)||(27341272-27341342)
chr3 (1-80)||(8154572-8154651)
chr3 (1-80)||(41006614-41006693)
chr3 (1-80)||(41015394-41015473)
chr3 (1-85)||(9525357-9525441)
chr3 (1-85)||(9555031-9555115)
chr3 (1-69)||(43470492-43470560)
chr3 (1-80)||(2211297-2211376)
chr3 (13-66)||(13272670-13272723)
chr3 (13-66)||(4505979-4506032)
chr3 (28-69)||(16288692-16288733)
chr3 (13-66)||(17657630-17657683)
chr3 (13-66)||(27976552-27976605)
chr3 (12-68)||(1477758-1477814)
chr3 (22-66)||(17618130-17618174)
[»] scaffold0156 (1 HSPs)
scaffold0156 (1-85)||(35279-35363)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-80)||(33093-33172)
[»] scaffold0632 (1 HSPs)
scaffold0632 (1-71)||(4448-4518)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-71)||(15871-15941)
[»] scaffold0497 (1 HSPs)
scaffold0497 (1-69)||(11051-11119)
[»] chr1 (13 HSPs)
chr1 (1-80)||(3432818-3432897)
chr1 (1-98)||(41746602-41746700)
chr1 (1-80)||(31540012-31540091)
chr1 (1-80)||(31548581-31548660)
chr1 (1-98)||(32137664-32137761)
chr1 (1-80)||(35103992-35104071)
chr1 (19-68)||(8241438-8241487)
chr1 (206-244)||(28457826-28457864)
chr1 (13-66)||(8579360-8579413)
chr1 (13-66)||(12465698-12465751)
chr1 (19-60)||(28457632-28457673)
chr1 (211-243)||(23950396-23950428)
chr1 (211-243)||(28993305-28993337)
[»] scaffold0173 (1 HSPs)
scaffold0173 (8-98)||(839-929)
[»] scaffold0209 (1 HSPs)
scaffold0209 (1-80)||(12-91)
[»] scaffold0290 (1 HSPs)
scaffold0290 (9-69)||(15760-15820)
[»] scaffold0222 (1 HSPs)
scaffold0222 (1-68)||(20422-20489)
[»] scaffold0315 (1 HSPs)
scaffold0315 (13-69)||(10595-10651)
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-69)||(7129-7197)
[»] scaffold0455 (1 HSPs)
scaffold0455 (13-66)||(6056-6109)
[»] scaffold0047 (1 HSPs)
scaffold0047 (13-66)||(59736-59789)


Alignment Details
Target: scaffold0016 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 23523 - 23620
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 98  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||| |||| |||| |||| || |||||||||    
T  23523 taaagtcgggaattttcatcatttctgacgaaatttcggtagagaggttactttgaagtacctcatttttgattccgagtcgggccctcttccctctt 23620  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 17973623 - 17973707
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggc 85  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| |||| ||||    
T  17973623 taaagtcgggaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcattttttattccgagtcgggc 17973707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 25579819 - 25579740
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  25579819 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 25579740  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 39837569 - 39837490
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  39837569 taaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 39837490  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 17664644 - 17664568
Alignment:
Q  4 agtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||||||||||||||||||| |  | ||| | |||||||||||| |||||||||||||| ||||    
T  17664644 agtcgggaattttcatcgtttcagacgaaattttgacaaagaagttactttgaagtacctcattttttattccgagt 17664568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30938340 - 30938419
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  30938340 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 30938419  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39845612 - 39845541
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttta 72  Q
    ||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||    
T  39845612 taaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcatttttta 39845541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4839789 - 4839715
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattc 75  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||| | |||||||||||| ||||||||| ||||    
T  4839789 taaagtcgggaattttcgtcgtttcagacgaaatttcgacaaagaagttactttgaagtacctcatttttgattc 4839715  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 17683800 - 17683724
Alignment:
Q  4 agtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||||||||||| |||||||||||||||||| |  | ||| | |||||||||||| |||||||||||||| ||||    
T  17683800 agtcgggaattttcgtcgtttcagacgaaattttgacaaagaagttactttgaagtacctcattttttattccgagt 17683724  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1407080 - 1407001
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  1407080 taaagttgtgaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 1407001  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 26873607 - 26873541
Alignment:
Q  5 gtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 71  Q
    ||||| ||||||| ||||||||||||||||||||  | ||||| |||||| ||||| || |||||||    
T  26873607 gtcggaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttaaagtaccttatttttt 26873541  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 23090611 - 23090667
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    |||| ||| ||| ||||||||||| |  |||||||||||||||||||| ||||||||    
T  23090611 ttttaatcattttagacgaaatttggacagagaggatactttgaagtacctcatttt 23090667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 25700273 - 25700329
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  25700273 ttttaatcatttcaaacgaaatttcggaagggaggttactttgaagtacctcatttt 25700329  T

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Target: scaffold0002 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 121286 - 121365
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||    
T  121286 taaagtcgggaattttcgtcgtttcagacgaaatttcggtagagaggttactttgaagtaaatcatttttgattccgagt 121365  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 25991908 - 25991987
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  25991908 taaagtcgggaattttcgtcgtttcagaagaaatttcggtagagaggttactttgaagtacctcattttttattcagagt 25991987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 25550353 - 25550432
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||| ||||||||| || ||||||| |||||||||||| |||||||||||||| ||||    
T  25550353 taaagtcgggaattttcgtcgtttcaaacgaaattttggcagagaggttactttgaagtacctcattttttattccgagt 25550432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13825761 - 13825845
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggc 85  Q
    ||||||| ||||||||| ||||||||||||||||||||  ||||||| |||||||||||| ||||||||| |||| |||| ||||    
T  13825761 taaagtcaggaattttcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacctcatttttgattccgagtcgggc 13825845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30824536 - 30824457
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||| ||||||||| |||| ||||    
T  30824536 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcatttttgattccgagt 30824457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23925393 - 23925463
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 71  Q
    |||||||||||||||||||| |||  ||||||||||||||||||| | |||||||||||| ||||||||||    
T  23925393 taaagtcgggaattttcatcatttttgacgaaatttcggtagagatgttactttgaagtacctcatttttt 23925463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 5004119 - 5004198
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  5004119 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 5004198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 25506548 - 25506469
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||| |||||||||||||| ||||||| |||||| || || ||||||||| |||| ||||    
T  25506548 taaagtcgggaattttcgtcgttttagacgaaatttcggcagagaggttactttaaaatacctcatttttgattccgagt 25506469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 33298143 - 33298221
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||| | |||||||||||| |||||||||||||| ||||    
T  33298143 taaagtcgggaattttcgtcgtttcagacgaaatttcgacaaaga-gttactttgaagtacctcattttttattccgagt 33298221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 5994757 - 5994855
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt-attcggagttgggctctgttccctctt 98  Q
    ||||||||| ||||||| ||||||||||| |||||| || | ||||| |||||||||||| |||||||||| |||| |||| |||| || |||||||||    
T  5994757 taaagtcggaaattttcgtcgtttcagacaaaattttggcaaagaggttactttgaagtacctcattttttgattccgagtcgggccctcttccctctt 5994855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35091683 - 35091610
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttatt 74  Q
    ||||||||| ||||||| |||||||||||||||||| || |  |||| |||||||||||| |||||||||||||    
T  35091683 taaagtcggaaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttttatt 35091610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 26526708 - 26526640
Alignment:
Q  2 aaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttt 70  Q
    |||||||||||||||| |||||||||||||||| |||| |||| || ||||||||| || |||||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagagtggttactttgaattacctcattttt 26526640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 11279895 - 11279974
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  11279895 taaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 11279974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 15391610 - 15391547
Alignment:
Q  9 ggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttta 72  Q
    ||||||||| ||||||||||||||||||||  | ||||| |||||||||||| |||||||||||    
T  15391610 ggaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctcatttttta 15391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 20532470 - 20532403
Alignment:
Q  211 gtcaatgagtccgaaaatttcagcaagggtccaatttcnnnnnnnncatttcttctccgtacgccaca 278  Q
    |||||| |||||||||||||||||||||||||| |||         ||||||||||||||||||||||    
T  20532470 gtcaataagtccgaaaatttcagcaagggtccatttttctttttttcatttcttctccgtacgccaca 20532403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 15140726 - 15140779
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  15140726 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 15140779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 23985100 - 23985047
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23985100 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23985047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 28127510 - 28127457
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  28127510 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 28127457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 12996534 - 12996613
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  12996534 taaagtcggaaattttcgtcgtttcagacgaaatttcggtagagaggttactttgaagtacctcattttttattccgagt 12996613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 27343698 - 27343619
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||||   ||||||| |||||||||||| |||||||||||||| ||||    
T  27343698 taaagtcgggaattttcgtcgtttcagacgaaatttcaacagagaggttactttgaagtacctcattttttattccgagt 27343619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 4523687 - 4523608
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  4523687 taaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 4523608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8094289 - 8094210
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||| ||||||||| |||| ||||    
T  8094289 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcatttttgattccgagt 8094210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8103095 - 8103016
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||| ||||||||| |||| ||||    
T  8103095 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcatttttgattccgagt 8103016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 52295662 - 52295732
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 71  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||||  |||||||||||| ||||||||||    
T  52295662 taaagtcgggaattttcgtcgtttcagacaaaatttcggcagagagattactttgaagtacctcatttttt 52295732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 21532311 - 21532233
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||| ||||||| ||||||||||||||||||||  | | ||  |||||||||||| |||||||||||||| ||||    
T  21532311 taaagtcggaaattttcgtcgtttcagacgaaatttcgaca-aaagattactttgaagtacctcattttttattctgagt 21532233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 12402910 - 12402956
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagagg 47  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  12402910 taaagtcaggaattttcgtcgtttcagacgaaatttcggcagagagg 12402956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 19647405 - 19647352
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  19647405 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 19647352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 19772260 - 19772313
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  19772260 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 19772313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 35037914 - 35038011
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 98  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| || |||||||||||||| ||||  ||| || |||||||||    
T  35037914 taaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttttattccgagtcaggccctcttccctctt 35038011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 14582983 - 14583062
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  14582983 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 14583062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 15944564 - 15944485
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  15944564 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 15944485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 15953079 - 15953000
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  15953079 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 15953000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 35138651 - 35138730
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  35138651 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 35138730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 35146987 - 35147066
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  35146987 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 35147066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 38168364 - 38168285
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  38168364 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 38168285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 41233851 - 41233772
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  41233851 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 41233772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 20621578 - 20621655
Alignment:
Q  3 aagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||| ||||||||||| ||||||||  | ||| | |||||||||||| |||||||||||||| ||||    
T  20621578 aagtcgggaattttcgtcgtttcagacaaaatttcgacaaagatgttactttgaagtacctcattttttattctgagt 20621655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 42565936 - 42565857
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  42565936 taaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 42565857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 42574560 - 42574481
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  42574560 taaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 42574481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17687405 - 17687361
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagaga 45  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||    
T  17687405 taaagtcgggaattttcgtcgtttcagacgaaatttcggcagaga 17687361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 20372320 - 20372251
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 71  Q
    ||||||||| ||||||| ||||||||||||||||||||  | | ||| |||||||||||| ||||||||||    
T  20372320 taaagtcggaaattttcgtcgtttcagacgaaatttcgaca-aaaggttactttgaagtacctcatttttt 20372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 35303808 - 35303862
Alignment:
Q  14 tttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 68  Q
    |||| ||||||||||||||||||||| ||||||| || ||||||||| |||||||    
T  35303808 tttcgtcgtttcagacgaaatttcggcagagaggttaatttgaagtacctcattt 35303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18989380 - 18989312
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    ||||| ||||||||||  |||  |||||||||||| ||||||||||| |||||| ||||| ||||||||    
T  18989380 taaagccgggaatttttgtcgcatcagacgaaattacggtagagaggttactttcaagtacctcatttt 18989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25483659 - 25483712
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatacttt 54  Q
    |||||||| |||||||| |||||||||||||||| |||  ||||||| ||||||    
T  25483659 taaagtcgagaattttcgtcgtttcagacgaaatctcgacagagaggttacttt 25483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25491265 - 25491318
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatacttt 54  Q
    |||||||| |||||||| |||||||||||||||| |||  ||||||| ||||||    
T  25491265 taaagtcgagaattttcgtcgtttcagacgaaatctcgacagagaggttacttt 25491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 27683434 - 27683381
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  27683434 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 27683381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44372763 - 44372800
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcg 38  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  44372763 taaagtcgggaattttcgtcgtttaagacgaaatttcg 44372800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44388674 - 44388711
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcg 38  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  44388674 taaagtcgggaattttcgtcgtttaagacgaaatttcg 44388711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 20372110 - 20372078
Alignment:
Q  211 gtcaatgagtccgaaaatttcagcaagggtcca 243  Q
    |||||| ||||||||||||||||||||||||||    
T  20372110 gtcaataagtccgaaaatttcagcaagggtcca 20372078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 10439995 - 10440074
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||| ||||    
T  10439995 taaagtcgggaattttcgtcgtttcagacgaaatttcggcagagaggttactttaaagtacctcattttttattccgagt 10440074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 18304399 - 18304326
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttatt 74  Q
    ||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||| |||||||||||||    
T  18304399 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttatt 18304326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 4952404 - 4952325
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||| ||||||| |||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  4952404 taaagtcggaaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 4952325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 13831558 - 13831637
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  13831558 taaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 13831637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 13839589 - 13839668
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  13839589 taaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 13839668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 12978513 - 12978592
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  12978513 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 12978592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 1955746 - 1955691
Alignment:
Q  14 tttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    |||| ||||||||||| ||||||||| ||||||| |||||||||| | ||||||||    
T  1955746 tttcgtcgtttcagacaaaatttcggcagagaggttactttgaagcacctcatttt 1955691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 20114119 - 20114066
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  20114119 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 20114066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 38247996 - 38248049
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  38247996 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 38248049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 20372920 - 20372841
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||| ||||    
T  20372920 taaagtcgggaattttcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacctcattttttattccgagt 20372841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 20398642 - 20398563
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||| ||||    
T  20398642 taaagtcgggaattttcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacctcattttttattccgagt 20398563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 23350083 - 23349986
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 98  Q
    |||||||||||||| || || |||||||||||||||||| | ||||| |||||||||||| |||||||||||||| |||| |||| || ||| |||||    
T  23350083 taaagtcgggaattctcgtcatttcagacgaaatttcggcaaagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctt 23349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 29186285 - 29186206
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||  |||||||||||||| ||||    
T  29186285 taaagtcgggaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtgcctcattttttattccgagt 29186206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43598053 - 43597974
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||||||||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  43598053 taaagtcgggaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 43597974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43603545 - 43603466
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||||||||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  43603545 taaagtcgggaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 43603466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 43609037 - 43608958
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||||||||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  43609037 taaagtcgggaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 43608958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 1728166 - 1728087
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||||||||||||||  ||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  1728166 taaagtcgggaattttcgccgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 1728087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 24956853 - 24956774
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  24956853 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 24956774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 24965316 - 24965237
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  24965316 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 24965237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 28843998 - 28844077
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  28843998 taaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 28844077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 28852608 - 28852687
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  28852608 taaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 28852687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 23028053 - 23028007
Alignment:
Q  22 tttcagacgaaatttcggtagagaggatactttgaagtaactcattt 68  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||    
T  23028053 tttcagacgaaatttcggcagagaggttactttgaagtacctcattt 23028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 23037923 - 23037969
Alignment:
Q  21 gtttcagacgaaatttcggtagagaggatactttgaagtaactcatt 67  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  23037923 gtttcagacgaaatttcggcagagaggttactttgaagtacctcatt 23037969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 31410956 - 31411022
Alignment:
Q  9 ggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattc 75  Q
    ||||||||| |||||| | |||||||||||  | ||||| |||||||||||| ||||||||||||||    
T  31410956 ggaattttcgtcgtttaaaacgaaatttcgacaaagaggttactttgaagtacctcattttttattc 31411022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 31421849 - 31421916
Alignment:
Q  3 aagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttt 70  Q
    ||||||| ||||||| ||||||||||| ||||||||  | ||| | |||||||||||| |||||||||    
T  31421849 aagtcggaaattttcgtcgtttcagacaaaatttcgacaaagatgttactttgaagtacctcattttt 31421916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 21988673 - 21988620
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  21988673 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 21988620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 21997317 - 21997264
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  21997317 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 21997264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 23606421 - 23606368
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23606421 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23606368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 23635076 - 23635129
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23635076 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23635129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 23829075 - 23829022
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23829075 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23829022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 23837816 - 23837763
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23837816 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23837763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 31550511 - 31550458
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| ||||| |||||||||||||| |||||    
T  31550511 ttttaatcatttcagacaaaatttcggcagagatgatactttgaagtacctcat 31550458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 21852635 - 21852579
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  21852635 ttttaatcatttcaaacgaaatttcggcagggaggttactttgaagtacctcatttt 21852579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 21869159 - 21869103
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  21869159 ttttaatcatttcaaacgaaatttcggcagggaggttactttgaagtacctcatttt 21869103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 50824410 - 50824489
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||    
T  50824410 taaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcattttttattccgagt 50824489  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 50851450 - 50851371
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||    
T  50851450 taaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcattttttattccgagt 50851371  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 14538612 - 14538514
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcgg-tagagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 98  Q
    ||||||||||||||||| |||||||||||||||||||||  | ||||| |||||||||||| |||||||||||||| |||| |||| || ||| |||||    
T  14538612 taaagtcgggaattttcgtcgtttcagacgaaatttcggcaaaagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctt 14538514  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27341342 - 27341272
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 71  Q
    ||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||    
T  27341342 taaagtcgggaattttcgtcgtttcagacgaaatttcggcagaaaggttactttgaagtacctcatttttt 27341272  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8154651 - 8154572
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  8154651 taaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 8154572  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41006614 - 41006693
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  41006614 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 41006693  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 41015394 - 41015473
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  41015394 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 41015473  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 9525441 - 9525357
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggc 85  Q
    ||||||||||||||||| | |||| |||||||||||||| ||| ||| |||||| || || |||||||||||||| |||| ||||    
T  9525441 taaagtcgggaattttcgttgttttagacgaaatttcggcagaaaggttactttaaaatacctcattttttattccgagtcgggc 9525357  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 9555115 - 9555031
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggc 85  Q
    ||||||||||||||||| | |||| |||||||||||||| ||| ||| |||||| || || |||||||||||||| |||| ||||    
T  9555115 taaagtcgggaattttcgttgttttagacgaaatttcggcagaaaggttactttaaaatacctcattttttattccgagtcgggc 9555031  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 43470560 - 43470492
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    ||||| || |||||||  ||||||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  43470560 taaagccgagaattttattcgtttcagacgaaatttcggcagagaggttactttgaagtacctcatttt 43470492  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 2211297 - 2211376
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||| ||||||||| |||||| |||||||||||||| | ||||| || ||| || || |||||||||||||| ||||    
T  2211297 taaagtcaggaattttcgtcgtttaagacgaaatttcggcaaagagggtattttaaaatacctcattttttattccgagt 2211376  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 13272670 - 13272723
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| |||||||||||||||||||| |||||    
T  13272670 ttttaatcatttcagacaaaatttcggcagagaggatactttgaagtacctcat 13272723  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 4506032 - 4505979
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  4506032 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 4505979  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 16288692 - 16288733
Alignment:
Q  28 acgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    |||||||||||| ||||||| |||||||||||| ||||||||    
T  16288692 acgaaatttcggcagagaggttactttgaagtacctcatttt 16288733  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 17657630 - 17657683
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  17657630 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 17657683  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 27976552 - 27976605
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  27976552 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 27976605  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 1477758 - 1477814
Alignment:
Q  12 attttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 68  Q
    ||||| ||| |||||||| ||||||||| || |||| |||||||||||| |||||||    
T  1477758 atttttatcatttcagacaaaatttcggcagggaggttactttgaagtacctcattt 1477814  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 17618174 - 17618130
Alignment:
Q  22 tttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||||||| ||||||||| || ||||||||||||||||| |||||    
T  17618174 tttcagacaaaatttcggcagggaggatactttgaagtacctcat 17618130  T

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Target: scaffold0156 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35363 - 35279
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggc 85  Q
    ||||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||| |||||||||||||| |||| ||||    
T  35363 taaagtcgggaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctcattttttattccgagtcgggc 35279  T

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Target: scaffold0111 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 33093 - 33172
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||| |||||| ||||| |||||||||||||| ||||    
T  33093 taaagtcgggaattttcgtcgtttcagacgaaatttcggcaaagaggttactttaaagtacctcattttttattccgagt 33172  T

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Target: scaffold0632 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 4448 - 4518
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 71  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||| |||||||||||| ||||||||||    
T  4448 taaagtcggtaattttcatcgtttcagacgaaatttcgacagagaggttactttgaagtacctcatttttt 4518  T

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Target: scaffold0083 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15871 - 15941
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 71  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  15871 taaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcatttttt 15941  T

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Target: scaffold0497 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11051 - 11119
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  11051 taaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcatttt 11119  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 3432897 - 3432818
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  3432897 taaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 3432818  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 41746700 - 41746602
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcgg-tagagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 98  Q
    ||||||||||||||||| ||||||||||| |||||||||  | ||||| |||||||||||| |||||||||||||| |||| |||| || ||| |||||    
T  41746700 taaagtcgggaattttcgtcgtttcagacaaaatttcggcaaaagaggttactttgaagtacctcattttttattccgagtcgggccctcttctctctt 41746602  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31540012 - 31540091
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  31540012 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 31540091  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31548581 - 31548660
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    ||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  31548581 taaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 31548660  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 32137761 - 32137664
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 98  Q
    ||||||||||||||||| |||||||||||||||||||   | | | | |||||||||||| |||||||||||||| |||| |||| || ||| |||||    
T  32137761 taaagtcgggaattttcgtcgtttcagacgaaatttcaacaaataagttactttgaagtacctcattttttattccgagtcgggccctcttctctctt 32137664  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 35104071 - 35103992
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||| |||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  35104071 taaagttgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 35103992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 8241487 - 8241438
Alignment:
Q  19 tcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 68  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  8241487 tcgtttcagacgaaatttcggtagagaggttactttaaagtacctcattt 8241438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 28457826 - 28457864
Alignment:
Q  206 ataatgtcaatgagtccgaaaatttcagcaagggtccaa 244  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  28457826 ataatgtcaatgagtccgaaaatttcagcaggggtccaa 28457864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 8579360 - 8579413
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  8579360 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 8579413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 12465751 - 12465698
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  12465751 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 12465698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 28457632 - 28457673
Alignment:
Q  19 tcgtttcagacgaaatttcggtagagaggatactttgaagta 60  Q
    ||||||||||||||||||||  ||||||| ||||||||||||    
T  28457632 tcgtttcagacgaaatttcgacagagaggttactttgaagta 28457673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 23950396 - 23950428
Alignment:
Q  211 gtcaatgagtccgaaaatttcagcaagggtcca 243  Q
    |||||| ||||||||||||||||||||||||||    
T  23950396 gtcaataagtccgaaaatttcagcaagggtcca 23950428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 28993337 - 28993305
Alignment:
Q  211 gtcaatgagtccgaaaatttcagcaagggtcca 243  Q
    |||||| ||||||||||||||||||||||||||    
T  28993337 gtcaataagtccgaaaatttcagcaagggtcca 28993305  T

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Target: scaffold0173 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 929 - 839
Alignment:
Q  8 gggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggctctgttccctctt 98  Q
    |||||||||| ||||||||||||||||||||| ||| ||| ||||||||| || ||||||||| |||| |||| |||| || ||| |||||    
T  929 gggaattttcgtcgtttcagacgaaatttcggcagaaaggttactttgaaatacctcatttttgattccgagtcgggccctcttctctctt 839  T

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Target: scaffold0209 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 91 - 12
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 80  Q
    |||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  91 taaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 12  T

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Target: scaffold0290 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 15820 - 15760
Alignment:
Q  9 ggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    ||||||||| ||| ||||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  15820 ggaattttcgtcgcttcagacgaaattacggtagataggttactttgaagtacctcatttt 15760  T

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Target: scaffold0222 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20489 - 20422
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 68  Q
    ||||| || |||||||| | ||||||||||||||||||| ||||||| ||||||| |||| |||||||    
T  20489 taaagccgagaattttcgttgtttcagacgaaatttcggcagagaggttactttggagtacctcattt 20422  T

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Target: scaffold0315 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 10651 - 10595
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    ||||| ||| ||||||||||||||||| | ||||| |||||||||||| ||||||||    
T  10651 ttttcgtcgcttcagacgaaatttcggcaaagaggttactttgaagtacctcatttt 10595  T

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Target: scaffold0170 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7197 - 7129
Alignment:
Q  1 taaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 69  Q
    ||||| || |||||||| | ||||||||||||||||||| ||  ||| |||||||||||| ||||||||    
T  7197 taaagccgagaattttcgttgtttcagacgaaatttcgggaggaaggttactttgaagtacctcatttt 7129  T

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Target: scaffold0455 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 6109 - 6056
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  6109 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 6056  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 59736 - 59789
Alignment:
Q  13 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 66  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  59736 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 59789  T

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