View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7701_high_9 (Length: 226)
Name: NF7701_high_9
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7701_high_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 15833000 - 15832775
Alignment:
| Q |
1 |
acgcgaaaaactcaaagatgcgcgaaaacaaaggacccttatgtctttatgttttacgtcgcgaatagaaagaacttgggtgatgaaatcaagttttgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15833000 |
acgcgaaaaactcaaagatgcgcgaaaacaaaggacccttatatctttatgttttacatcgcgaatagaaagaacttgggtgatgaaatcaagttttgaa |
15832901 |
T |
|
| Q |
101 |
gaagataaagggtgtcttgatatatcaattttcttatgatttttggttgaaataagtggaaatggatcaagagttgtgaaatcaagatcaggaaaagatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15832900 |
gaagataaagggtgtcttgatatatcaattttcttatgatttttggttgaaataagtggaaatggatcaagagttgtgaaatcaagatcaggaaaagatg |
15832801 |
T |
|
| Q |
201 |
tccaaagaaatttccatctctttgaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15832800 |
tccaaagaaatttccatctctttgaa |
15832775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University