View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7701_low_1 (Length: 528)
Name: NF7701_low_1
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7701_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 35 - 504
Target Start/End: Original strand, 3308604 - 3309072
Alignment:
| Q |
35 |
ggatttatttttgaaattgttgaatattgaaggctagtgcttaacgtgcgtgatagtgtggaagggttgaaagcttcagtgtcaaggcaatgaaacgatg |
134 |
Q |
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| T |
3308604 |
ggatttgtttttgaaattgttgagtatagaaggccagtgcttaacgtgtgtcatagtgtggaagggttgaaagcttcagtgtcaaggcaatgaaacgatg |
3308703 |
T |
|
| Q |
135 |
ccgtattagtggagaatgttattgcttggaaaaggagagagaatatgaactttctaggtgtatcaaagtagaaaagcaaagttgtaaagcatggattcca |
234 |
Q |
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| T |
3308704 |
ccgtattagtggagaatgttattgcttggaaaaggagagagaatatgaactttctaggtgtatcaaagtagaaaagcaaagttgtaaagcatggattcca |
3308803 |
T |
|
| Q |
235 |
actacgtagacgttaaggtaacaaaacgatgccgttttggagtatatnnnnnnnnnnnnnnnnttagtttgagtatccaaactcaaactagcatatgttt |
334 |
Q |
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| T |
3308804 |
actacgtagacgttaaggtaacaaaacgatgccgttttggagtatataaaaaaaattaaaaaattag--tgagtatccaaactcaaagtagcatatgttt |
3308901 |
T |
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| Q |
335 |
tttatgtatacactccgacgagcaaatcataaatcacaaattaaacaactttagtatctggtatctatcatttatctctgac-attaacaatcatcttaa |
433 |
Q |
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|||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
3308902 |
tttatgtatacactgtgaagatcaaatcataaatcacagattaaacaactttagtatctggtatctatcatttatctctgacgattaacaatcatctcaa |
3309001 |
T |
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| Q |
434 |
ttgatatattttctgtatatgtattagcacgttaatgatgttaaacaaagcttaaagtcaaaagtgaaagt |
504 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3309002 |
ttgatatattttctatatatgtattagcacgttaacgatgttaaacaaagcttaaagtcaaaagtgaaagt |
3309072 |
T |
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