View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7701_low_11 (Length: 273)
Name: NF7701_low_11
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7701_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 4253095 - 4253217
Alignment:
| Q |
133 |
ggctctcactctttttctatcagtaatcttagctggaatttgacttgttcatccaaatcccaactatttgatttcgacttgtatgtcaatattatgaaat |
232 |
Q |
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| T |
4253095 |
ggctctcactctttttctatcagtaatcttagctgaaatttgacttgttcatccaaatcccaactatttgatttcgacttgtatgtcaatattatgaaat |
4253194 |
T |
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| Q |
233 |
aatggattactagatgtcattag |
255 |
Q |
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| T |
4253195 |
aagggattactagatgtcattag |
4253217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 4252962 - 4253036
Alignment:
| Q |
3 |
tttgtcatcacaaatatattcatctcggtatctttaagaaaggtatagttagctatttttgaaatttatgaggca |
77 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4252962 |
tttgtcatcacaaatatattcatctcggtatctttaagaaaggtatagttagctatttttgaaatttatgaggca |
4253036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 133 - 255
Target Start/End: Original strand, 2804186 - 2804308
Alignment:
| Q |
133 |
ggctctcactctttttctatcagtaatcttagctggaatttgacttgttcatccaaatcccaactatttgatttcgacttgtatgtcaatattatgaaat |
232 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
2804186 |
ggctatcactctttttctatcagtaatcttagctggaatttgacttgttcatccaaattccaactatttgattttgacttgtatgtcaatatcatgaaat |
2804285 |
T |
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| Q |
233 |
aatggattactagatgtcattag |
255 |
Q |
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| T |
2804286 |
aatggattactagatgtcattag |
2804308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 2804078 - 2804151
Alignment:
| Q |
3 |
tttgtcatcacaaatatattcatctcggtatctttaagaaaggtatagttagctatttttgaaatttatgaggca |
77 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
2804078 |
tttgtcatcacaaatatattcatctcggcatctttaag-aaggtatagttggctatttttgaaatttatgaggca |
2804151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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