View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7701_low_12 (Length: 269)
Name: NF7701_low_12
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7701_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 3094089 - 3094357
Alignment:
| Q |
1 |
acccaagagacttggaacgatgcatacaaggcatgggcacaattgagaaaataatagattcaaaggcattttctccatttaaatacacaaacatgtcagt |
100 |
Q |
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| T |
3094089 |
acccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaataatagattcaaaggcattttctccatttaaatacacaaacatgtcagt |
3094188 |
T |
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| Q |
101 |
ttctatgctacttaacatgacagcaaattcaccagtaaatttattgcctaaacacacaaatacttcaatgtctttggaacaattttgtagagacactgtg |
200 |
Q |
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| T |
3094189 |
ttctatgctacttaacatgacagcaaattcaccagtaaatttattgcctaaacacacaaatacttcaatgtctttggaacaattttgtagagacactgtg |
3094288 |
T |
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| Q |
201 |
atgactatatggcattatcatggtggttgtcaagttggtagggttgttgatagtgattataaggttgct |
269 |
Q |
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| T |
3094289 |
atgactatatggcattatcatggtggttgtcaagttggtagggttgttgatagtgattataaggttgct |
3094357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 3085243 - 3085508
Alignment:
| Q |
1 |
acccaagagacttggaacgatgcatacaaggcatgggcacaattgagaaaataatagattcaaaggcattttctccatttaaatacacaaacatgtcagt |
100 |
Q |
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| T |
3085243 |
acccaagagacttggaacgatgcatacaaggcatgggcacaattgagaaaataatagattcaaatgcttttgctccatttagatacaataacatatcatt |
3085342 |
T |
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| Q |
101 |
ttctatgctacttaacatgacagcaaattcaccagtaaatttattgcctaaacacacaaatacttcaatgtctttggaacaattttgtagagacactgtg |
200 |
Q |
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| T |
3085343 |
ttctatgttacttaacatgattgcaaatgcacaagtaaatttattgcctaagcacacaaatacttcaatgtctttggaacaattttgtagagacactgtg |
3085442 |
T |
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| Q |
201 |
atgactatatggcattatcatggtggttgtcaagttggtagggttgttgatagtgattataaggtt |
266 |
Q |
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| T |
3085443 |
atgacaatatggcattatcatggtggttgtcaagttggtagggttgttgataatgattataaggtt |
3085508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 42960094 - 42960045
Alignment:
| Q |
177 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
226 |
Q |
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| T |
42960094 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
42960045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 404890 - 404934
Alignment:
| Q |
204 |
actatatggcattatcatggtggttgtcaagttggtagggttgtt |
248 |
Q |
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| T |
404890 |
actatatggcattatcatggtggatgtgttgttggtagggttgtt |
404934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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