View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7701_low_14 (Length: 258)

Name: NF7701_low_14
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7701_low_14
NF7701_low_14
[»] chr4 (20 HSPs)
chr4 (1-258)||(4360739-4360996)
chr4 (70-258)||(4344377-4344565)
chr4 (70-258)||(4124101-4124289)
chr4 (91-258)||(4335097-4335264)
chr4 (70-258)||(4320781-4320969)
chr4 (109-220)||(4133623-4133734)
chr4 (105-202)||(6752726-6752823)
chr4 (105-202)||(6772870-6772967)
chr4 (105-202)||(6815236-6815333)
chr4 (105-258)||(6837040-6837193)
chr4 (107-258)||(6532394-6532545)
chr4 (105-202)||(6498744-6498841)
chr4 (105-202)||(6675469-6675566)
chr4 (150-202)||(6650878-6650930)
chr4 (105-202)||(6588414-6588511)
chr4 (105-258)||(6728172-6728325)
chr4 (105-202)||(6796553-6796650)
chr4 (100-199)||(7885612-7885711)
chr4 (153-202)||(6621725-6621774)
chr4 (150-202)||(6545666-6545718)
[»] chr6 (24 HSPs)
chr6 (70-258)||(5354776-5354964)
chr6 (92-258)||(5690321-5690487)
chr6 (70-258)||(5284551-5284739)
chr6 (84-258)||(5074070-5074244)
chr6 (70-256)||(5176470-5176656)
chr6 (94-258)||(5182089-5182253)
chr6 (92-258)||(5128579-5128745)
chr6 (70-256)||(5278297-5278483)
chr6 (102-258)||(5447350-5447506)
chr6 (74-248)||(5344596-5344770)
chr6 (93-258)||(5433789-5433954)
chr6 (70-258)||(5257496-5257684)
chr6 (100-212)||(5102822-5102934)
chr6 (70-258)||(5396681-5396869)
chr6 (102-217)||(5096471-5096586)
chr6 (77-258)||(5147058-5147239)
chr6 (100-217)||(5370332-5370449)
chr6 (91-258)||(5425662-5425829)
chr6 (91-201)||(5066913-5067023)
chr6 (100-217)||(5157831-5157948)
chr6 (70-258)||(5383057-5383245)
chr6 (91-201)||(5350148-5350256)
chr6 (91-256)||(5446909-5447074)
chr6 (100-197)||(5244090-5244187)
[»] chr7 (3 HSPs)
chr7 (100-258)||(36213991-36214149)
chr7 (100-258)||(18935147-18935305)
chr7 (100-201)||(34724805-34724906)
[»] chr5 (1 HSPs)
chr5 (74-258)||(8877344-8877528)
[»] scaffold0294 (1 HSPs)
scaffold0294 (70-201)||(9119-9250)
[»] chr3 (4 HSPs)
chr3 (100-258)||(47987014-47987172)
chr3 (100-258)||(47996301-47996459)
chr3 (100-258)||(48005588-48005746)
chr3 (100-258)||(48014873-48015031)
[»] scaffold0552 (1 HSPs)
scaffold0552 (105-202)||(8503-8600)
[»] scaffold0373 (1 HSPs)
scaffold0373 (105-258)||(9456-9609)
[»] scaffold0813 (1 HSPs)
scaffold0813 (150-202)||(5044-5096)
[»] scaffold0286 (1 HSPs)
scaffold0286 (150-202)||(6470-6522)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 4360739 - 4360996
Alignment:
Q  1 ttggtattaaaaacatgtctctgcgtccagataaacactttattatcactttcaaggttgcaactactgtaatatttatgttatttcaggggatggagca 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4360739 ttggtattaaaaacatgtctctgcgtccagataaacattttattatcactttcaaggttgcaactactgtaatatttatgttatttcaggggatggagca 4360838  T
Q  101 gctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4360839 gctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtcca 4360938  T
Q  201 aggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4360939 aggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 4360996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 70 - 258
Target Start/End: Original strand, 4344377 - 4344565
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 169  Q
    ||||||||  ||| || ||| ||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  4344377 taatatttccgttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctgacacagacgcctgacttttcatacttgcctaa 4344476  T
Q  170 tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4344477 tcttgaaaagctagtactcaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaacaaaattcttttgataaatt 4344565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 70 - 258
Target Start/End: Complemental strand, 4124289 - 4124101
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 169  Q
    |||||||| |||| || ||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  4124289 taatatttctgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacacagacccctgacttttcatacttgcctaa 4124190  T
Q  170 tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
     ||||||||||| ||||| |||||||||||||||||||||||| | ||||| |  ||||||||||| |||||| |||||||||||||||    
T  4124189 ccttgaaaagctggtactcaaagattgtccaaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaatt 4124101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 4335097 - 4335264
Alignment:
Q  91 ggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaa 190  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||| ||    
T  4335097 ggatggagcagttgaaaattctcaatcttagtcattctcattatctaacacagacccctgatttttcatacttgcctaatcttgaaaacctagtactcaa 4335196  T
Q  191 agattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||||||||| |||||||||||| | ||||| |  ||||||||||| |||||| |||||||||||||||    
T  4335197 agattgtccgaggctgtctgaggtatcccatacaattggacatcttaagaaagttcttttgataaatt 4335264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 70 - 258
Target Start/End: Complemental strand, 4320969 - 4320781
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 169  Q
    |||||||| | || || ||| |||||||||||||||| ||||| |||||||||||||||||  || |||||||||| |||||||||||||||||||||||    
T  4320969 taatatttttatttttgcagaggatggagcagctgaagattctaaatcttagtcattctcatcatttgacacagacccctgacttttcatacttgcctaa 4320870  T
Q  170 tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||||||||||||||| ||  ||||||| |||||||||||| || ||||||| || |||||||||||||| ||| || ||||||||||||    
T  4320869 tcttgaaaagctagtgctcgaagattgcccaaggctgtctcaggtttcccatagcattggacatctcaaaaaagttgttttgataaatt 4320781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 4133734 - 4133623
Alignment:
Q  109 ttctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaaggctgtc 208  Q
    |||||||||||||||||||||| | |||   |||||| || || |||||| || |||||||||| ||||| ||| |||| ||||||||||||||||||||    
T  4133734 ttctcaatcttagtcattctcattgtctagtacagaccccagatttttcacacatgcctaatctagaaaaactaatactcaaagattgtccaaggctgtc 4133635  T
Q  209 tgagatttccca 220  Q
    |||| |||||||    
T  4133634 tgaggtttccca 4133623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 6752726 - 6752823
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||| |||||||||||||||||  || ||||  | || || |||||||||||  ||||||||||||||||||| ||||| ||||| ||||||||    
T  6752726 aaaattcttaatcttagtcattctcaggatttgaccgaaactccagacttttcatatatgcctaatcttgaaaagcttgtactcaaagactgtccaag 6752823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 6772870 - 6772967
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||| |||||||||||||| ||  || ||||  | || || ||||||||||||||||| |||||||||||||||||||| ||  ||||||||||    
T  6772870 aaaattcttaatcttagtcattcccatgatttgaccgaaaccccagacttttcatacttgccgaatcttgaaaagctagtactcaagaattgtccaag 6772967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 6815236 - 6815333
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||| ||||| |||||||||| | || ||||  | || || |||||| |||||||||| |||||||||||||||||||| ||| ||||||||||    
T  6815236 aaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttgccaaatcttgaaaagctagtactcaaaaattgtccaag 6815333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 258
Target Start/End: Original strand, 6837040 - 6837193
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaaggc 204  Q
    |||||||| |||||||||||||||||  || ||||  | || || ||||| |||||  |||| |||||||||||||||||||| ||||| ||||||||      
T  6837040 aaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccgaatcttgaaaagctagtactcaaagactgtccaagtt 6837139  T
Q  205 tgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||||| | | ||||| || ||||||  |||| | ||| ||||| |||||||||    
T  6837140 tgtctgcggtctcccatagcattggatctctccataaacttcttctgataaatt 6837193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 258
Target Start/End: Complemental strand, 6532545 - 6532394
Alignment:
Q  107 aattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaaggctg 206  Q
    |||||| |||||||||||||||| | || ||||  | || ||  ||||||||||  ||||||||||||||||| ||||||| ||||| ||||||||  ||    
T  6532545 aattcttaatcttagtcattctctacatttgactgaaaccccaaacttttcatatatgcctaatcttgaaaagttagtactcaaagactgtccaagtttg 6532446  T
Q  207 tctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||| | | ||||| || ||||||  |||| | ||| ||||| |||||||||    
T  6532445 tctgcggtctcccatagcattggatctctccaaaaacttcttctgataaatt 6532394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 6498841 - 6498744
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||| |||||||||||||||||  || |||   | || || |||||| | |||||||||||| |||||||||||||||| ||||| ||||||||    
T  6498841 aaaattcttaatcttagtcattctcagaatttgattgaaaccccagactttacgtacttgcctaatattgaaaagctagtactcaaagactgtccaag 6498744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 6675469 - 6675566
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||| |||||||||||||||||| || || |  | || || ||||||||||||||||| ||| |||||||||| || || ||||| ||||||||    
T  6675469 aaaattcttaatcttagtcattctcaaaatttggctgaaaccccagacttttcatacttgcccaatattgaaaagctggtgctcaaagactgtccaag 6675566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 6650878 - 6650930
Alignment:
Q  150 gacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||||| | ||||||||||||||||||||||||| ||||| ||||||||    
T  6650878 gacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 6650930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 6588511 - 6588414
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||| |||||||||||||||| | || ||||  | || || |||||||| ||||| ||||||||||||||||| || || ||| | ||||||||    
T  6588511 aaaattcttaatcttagtcattctctagatttgactgaaaccccagacttttcctacttacctaatcttgaaaagcttgtgctaaaaaactgtccaag 6588414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 258
Target Start/End: Original strand, 6728172 - 6728325
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaaggc 204  Q
    |||||||| ||||||||||||||||   || ||||  | || || |||||||| ||||| ||||||||||||||||| || || ||| | ||||||||      
T  6728172 aaaattcttaatcttagtcattctctggatttgactgaaaccccagacttttcctacttacctaatcttgaaaagctcgtgctcaaaaactgtccaagtt 6728271  T
Q  205 tgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||||  | | |||||||| ||||||  |||  | ||||||||| |||||||||    
T  6728272 tgtctacggtctcccaaagcattggatctctacaaaaaattcttctgataaatt 6728325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 6796553 - 6796650
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||| |||||||||||||| |   || ||||  | || || |||||| ||||||| || |||||||||||||||||||| ||| ||||||||||    
T  6796553 aaaattcttaatcttagtcattccctggatttgactgaaaccccagactttacatacttaccaaatcttgaaaagctagtactaaaaaattgtccaag 6796650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 199
Target Start/End: Complemental strand, 7885711 - 7885612
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtcc 199  Q
    ||||||||||||| ||| | |||||||||||  |  ||| ||| || || ||||||||| | ||||| |||||||||||| || ||||||| ||||||||    
T  7885711 agctgaaaattcttaatttgagtcattctcacaacttgagacatacccccgacttttcaaaattgccaaatcttgaaaagttaatacttaaggattgtcc 7885612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 6621774 - 6621725
Alignment:
Q  153 ttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    ||||||||| |||||||||| ||||||||||| || ||||| ||||||||    
T  6621774 ttttcatacatgcctaatctcgaaaagctagtgctcaaagactgtccaag 6621725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 6545718 - 6545666
Alignment:
Q  150 gacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||||||  ||||||||||||||||| ||||||| ||||  ||||||||    
T  6545718 gacttttcatatatgcctaatcttgaaaagatagtactcaaaggctgtccaag 6545666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 258
Target Start/End: Complemental strand, 5354964 - 5354776
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 169  Q
    |||||| |||||| || ||| | |||||||| |||||||||||||||||||||||||| || | ||||||||| || ||||||||||| ||| |||||||    
T  5354964 taatatgtatgttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctgacacatacccctgacttttcttacatgcctaa 5354865  T
Q  170 tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||||||||||| ||||| ||||||||||||| | | |||||  |||| | ||| |||||||||||||| ||||||||| |||||||||    
T  5354864 tcttgaaaagcttgtactcaaagattgtccaatgttatctgaagtttctccaagcattggacatctcaataaaattcttctgataaatt 5354776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 92 - 258
Target Start/End: Complemental strand, 5690487 - 5690321
Alignment:
Q  92 gatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaa 191  Q
    ||||||| |||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||  | |||||||||||||||||||| |||| |||    
T  5690487 gatggagaagcttaaaattctcaatcttagtcactctcattatctgacacagaccccagacttttcaatcatgcctaatcttgaaaagctaatactcaaa 5690388  T
Q  192 gattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||||||||||| ||  |||| ||||||| || |||||||||||| | ||||||||| |||||||||    
T  5690387 gattgtccaaggttgcgtgaggtttcccatagcattggacatctcgacaaaattcttctgataaatt 5690321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 258
Target Start/End: Complemental strand, 5284739 - 5284551
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 169  Q
    ||||||||||||| || ||| |||||||| |||||||||||||||||||||||||||| || ||||| ||||  |  |||||||||||  || |||||||    
T  5284739 taatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatctcacacgaagccctgacttttcgaacatgcctaa 5284640  T
Q  170 tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||||||||||||||| || ||||||||||||||||| |||||| |||| |  || |||||| ||||||| ||||||  |||||||||||    
T  5284639 tcttgaaaagctagtgctcaaagattgtccaaggctatctgaggtttcacctagcattggaaatctcaataaaattgctttgataaatt 5284551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 258
Target Start/End: Complemental strand, 5074244 - 5074070
Alignment:
Q  84 tttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctag 183  Q
    |||||| || ||||| |||||||||| |||||||||||||||||||| |||||||| || || || || |||||| ||||||||||||||||| | ||||    
T  5074244 tttcagaggttggagaagctgaaaatactcaatcttagtcattctcattatctgacgcaaactccagatttttcaaacttgcctaatcttgaacaactag 5074145  T
Q  184 tacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||| | ||||||||||||| |||| ||| |||| || ||||||| ||||||||| ||||||||| |||||||||    
T  5074144 tactcacagattgtccaaggttgtcagaggtttctcatagtattgaacatctcaataaaattcttctgataaatt 5074070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 5176470 - 5176656
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 169  Q
    |||||||| |||| || ||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||| || ||||||||| || |||||||    
T  5176470 taatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaa 5176569  T
Q  170 tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaa 256  Q
    ||||||||||||  |||| | |||||| |||||| ||  |||| ||||||| || |||||||||||| | ||||||||| |||||||    
T  5176570 tcttgaaaagcttatactcatagattgcccaaggttgcgtgaggtttcccatagcattggacatctcgataaaattcttctgataaa 5176656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 258
Target Start/End: Complemental strand, 5182253 - 5182089
Alignment:
Q  94 tggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaaga 193  Q
    ||||| ||||||||||||||||||||||||||||||| | |||| || |||| || ||||||||| |||||||||| |||||| || ||||||| | |||    
T  5182253 tggagaagctgaaaattctcaatcttagtcattctcattttctgtcaaagactccagacttttcaaacttgcctaaccttgaacagttagtactcacaga 5182154  T
Q  194 ttgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||||| | | |||||||  ||||||||||||||||| ||||||| ||||| |||||||||||||    
T  5182153 ttgtccgaagttgtctgaagtttcccaaagtattggagatctcaataaaatacttttgataaatt 5182089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 258
Target Start/End: Complemental strand, 5128745 - 5128579
Alignment:
Q  92 gatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaa 191  Q
    ||||||| |||||||||||||||||| |||||||||||| | ||||||||| || || ||||||||||| || ||||||||||||||||||||||| |||    
T  5128745 gatggagaagctgaaaattctcaatcatagtcattctcattgtctgacacacaccccagacttttcatatttacctaatcttgaaaagctagtactcaaa 5128646  T
Q  192 gattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||||| ||| | |||||||| ||||    || || ||||||||||| ||||||||| |||||||||    
T  5128645 gattgttcaatgttgtctgaggtttctactagcatcggacatctcaataaaattcttctgataaatt 5128579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 256
Target Start/End: Original strand, 5278297 - 5278483
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 169  Q
    |||||||| |||| || ||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||| || ||||||||| || |||||||    
T  5278297 taatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgacagagaccccagacttttcaaacatgcctaa 5278396  T
Q  170 tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaa 256  Q
    ||||||||||||  |||| | |||||| |||||| ||| |||| |||| || || |||||| ||||| | ||||||||| |||||||    
T  5278397 tcttgaaaagcttatactcatagattgcccaaggttgtgtgaggtttctcatagcattggatatctcgataaaattcttctgataaa 5278483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 102 - 258
Target Start/End: Original strand, 5447350 - 5447506
Alignment:
Q  102 ctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaa 201  Q
    ||||||| |||||||||||||||||||||   ||||||| | |  || |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  5447350 ctgaaaaatctcaatcttagtcattctcatcgtctgacaaacatcccggacttttcatgcttgcctaatcttgaaaagctagtactcaaagattgtccaa 5447449  T
Q  202 ggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
     | |||||||| |||| |  || |||||||||||||| ||||||||| |||||||||    
T  5447450 tgttgtctgaggtttctcctagcattggacatctcaataaaattcttctgataaatt 5447506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 248
Target Start/End: Original strand, 5344596 - 5344770
Alignment:
Q  74 atttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatctt 173  Q
    ||||||||| || |||  ||||||| ||||||||||||||||||||||||||||||| || |||| ||| || || |||||||| ||||| |||||||||    
T  5344596 atttatgttcttacagatgatggagaagctgaaaattctcaatcttagtcattctcattacctgatacaaaccccggacttttcttacttacctaatctt 5344695  T
Q  174 gaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattctt 248  Q
    |||||| |||||||    |||||||||||  ||| ||||||||| || || |||||| |||||||||||||||||    
T  5344696 gaaaagttagtactcgtggattgtccaagtttgtgtgagatttctcatagcattggagatctcaagaaaattctt 5344770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 93 - 258
Target Start/End: Original strand, 5433789 - 5433954
Alignment:
Q  93 atggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaag 192  Q
    |||||| ||||||||||||| || |||||||||| ||| ||||||||||| || || ||||||||| | |||||||||||||||||| ||||||| | ||    
T  5433789 atggagaagctgaaaattcttaaccttagtcattgtcattatctgacacaaacaccagacttttcaaatttgcctaatcttgaaaagttagtactcacag 5433888  T
Q  193 attgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||||||||| || ||||||||||| |  || ||||| ||||||||  |||||||| |||||||||    
T  5433889 attgtccaagtctttctgagatttctcctagcattggccatctcaatgaaattcttctgataaatt 5433954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 70 - 258
Target Start/End: Complemental strand, 5257684 - 5257496
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcc-tgacttttcatacttgccta 168  Q
    ||||||||||||| || ||| |||||||| |||||||||||||||||||||||||||| |  | ||| ||| ||| ||| |||||||||  || ||||||    
T  5257684 taatatttatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccgttgtctcaca-agaagccctgacttttccaacatgccta 5257586  T
Q  169 atcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||||||||||| ||||||| ||||||||||||| ||| |||  | ||||   ||| |||||| |||||||||||||| ||||||||||||    
T  5257585 atcttgaaaagttagtactcaaagattgtccaatgctatctagggtttcttcaagcattggaaatctcaagaaaattgttttgataaatt 5257496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 5102934 - 5102822
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtcc 199  Q
    ||||||||||||| ||||||||||||||||| | |||||| || || ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||    
T  5102934 agctgaaaattctaaatcttagtcattctcattgtctgacgcacacccctgacttttcatacttgcctaatcttgagaagctggtactcaaagattgtcc 5102835  T
Q  200 aaggctgtctgag 212  Q
    || | ||||||||    
T  5102834 aatgttgtctgag 5102822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 70 - 258
Target Start/End: Original strand, 5396681 - 5396869
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 169  Q
    ||||||||||||| || ||| || ||||| ||||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||| || |||||||    
T  5396681 taatatttatgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattatttgacacagaccccagacttttcaaacatgcctaa 5396780  T
Q  170 tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||||||| | |||||| | |  |||||||||| | |||| ||  ||||||| | ||||||| |||| || ||||| ||| | |||||||    
T  5396781 tcttgaacaactagtagtcactgattgtccaaagttgtcagaagtttcccataatattggagatctgaaaaaaatacttctaataaatt 5396869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 5096471 - 5096586
Alignment:
Q  102 ctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaa 201  Q
    ||||||||||| ||||||||||||||||| | ||||||||| || || |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  5096471 ctgaaaattctaaatcttagtcattctcattgtctgacacacaccccagacttttcatacatgcctaatcttgagaagctggtacttaaagattgtccaa 5096570  T
Q  202 ggctgtctgagatttc 217  Q
     | |||||||| ||||    
T  5096571 tgttgtctgaggtttc 5096586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 258
Target Start/End: Complemental strand, 5147239 - 5147058
Alignment:
Q  77 tatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaa 176  Q
    |||||| || ||| |||||||| |||| ||||||||||| |||||||| ||||| ||| |||||||||| ||  |||||| | |||||||||||||||||    
T  5147239 tatgttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattatttgacacagaccccaaactttttaaacttgcctaatcttgaa 5147140  T
Q  177 aagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
     | ||||||||    |||||||||| | |||||||  |||| || ||||||||| ||||||| ||||||||| |||||||||    
T  5147139 caactagtactctctgattgtccaatgttgtctgaagtttctcatagtattggatatctcaataaaattcttctgataaatt 5147058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 5370332 - 5370449
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtcc 199  Q
    |||| |||||||| ||||||||||||||||| | |||||| || || || |||||||||||||||||||| ||||||||| ||||||| ||||||||| |    
T  5370332 agctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacttgcctaagcttgaaaagttagtactcaaagattgttc 5370431  T
Q  200 aaggctgtctgagatttc 217  Q
    || |||||||||| ||||    
T  5370432 aatgctgtctgaggtttc 5370449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 5425662 - 5425829
Alignment:
Q  91 ggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaa 190  Q
    |||||||  ||||||||||||| ||||||||||||||||| | |||||| |  || ||||||||| ||| | ||||||||||||||||||| || || ||    
T  5425662 ggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgacgcgcacccctgactttacattcatgcctaatcttgaaaagctggtgctcaa 5425761  T
Q  191 agattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||||||||||| | ||||||||||||| |  || |||||| ||||||   |||||||| | |||||||    
T  5425762 agattgtccaatgttgtctgagatttctcctagcattggaaatctcagagaaattcttctaataaatt 5425829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 201
Target Start/End: Complemental strand, 5067023 - 5066913
Alignment:
Q  91 ggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaa 190  Q
    |||||||  ||||||||||||| |||||||| |||||||| | |||||  || || ||||||||||||||  ||||||||||||||||||||||||| ||    
T  5067023 ggatggaaaagctgaaaattctaaatcttagccattctcattgtctgatgcacacccctgacttttcatatatgcctaatcttgaaaagctagtactcaa 5066924  T
Q  191 agattgtccaa 201  Q
    |||||||||||    
T  5066923 agattgtccaa 5066913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 217
Target Start/End: Complemental strand, 5157948 - 5157831
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtcc 199  Q
    |||| |||||||| ||||||||||||||||| | |||||| || || || |||||||||||| ||||||||||||| ||||| ||||| |||||||||||    
T  5157948 agctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgcctaatcttgagaagctggtactcaaagattgtcc 5157849  T
Q  200 aaggctgtctgagatttc 217  Q
    || | |||||||| ||||    
T  5157848 aatgttgtctgaggtttc 5157831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 258
Target Start/End: Original strand, 5383057 - 5383245
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 169  Q
    ||||||||||||| || ||| ||||||||   |||||||| || || |||||||||||||| || |||   ||||| || ||||| ||| | ||||||||    
T  5383057 taatatttatgttcttgcagaggatggagatactgaaaatcctaaaccttagtcattctcattacctggtgcagaccccagacttctcaaatttgcctaa 5383156  T
Q  170 tcttgaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||||||||||||||||||   ||||||||| ||| |||| ||| |||| |  || |||||| ||||||||||||||||| |||| ||||    
T  5383157 tcttgaaaagctagtactcgcagattgtccgaggttgtccgaggtttctcctagcattggagatctcaagaaaattcttctgattaatt 5383245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 5350148 - 5350256
Alignment:
Q  91 ggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaa 190  Q
    |||||||  ||||||||||||| |||||||||||||||   | ||||||||| || |  |||||||||||| ||||||||||||||||||||||||| ||    
T  5350148 ggatggaaaagctgaaaattctaaatcttagtcattcttgttgtctgacacacaccc--gacttttcatacatgcctaatcttgaaaagctagtactcaa 5350245  T
Q  191 agattgtccaa 201  Q
    |||||||||||    
T  5350246 agattgtccaa 5350256  T

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Target: chr6; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 256
Target Start/End: Original strand, 5446909 - 5447074
Alignment:
Q  91 ggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaa 190  Q
    |||||||| |||| ||||||||||||||||| ||||| || ||||| ||||| |  |||||||||||| ||  |||||||||| |||| |||||||| ||    
T  5446909 ggatggagaagctaaaaattctcaatcttagccattcgcactatctcacacaaagccctgacttttcaaacacgcctaatcttcaaaaactagtactcaa 5447008  T
Q  191 agattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaa 256  Q
    |||||| |||  | |||||||| |||| |  || ||  |||||||||| ||||||||| |||||||    
T  5447009 agattgcccactgttgtctgaggtttcacctagcatcagacatctcaataaaattcttctgataaa 5447074  T

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Target: chr6; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 5244187 - 5244090
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgt 197  Q
    |||| |||||||| ||||||||||||||||| | |||||| || || || |||||||||||| || | |||||||||||||||||||| |||||||||    
T  5244187 agctaaaaattctaaatcttagtcattctcattgtctgacgcacaccccagacttttcatacatgtcaaatcttgaaaagctagtactcaaagattgt 5244090  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 36214149 - 36213991
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtcc 199  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| || || |||||| || ||||||| |||||||| |||||||| | |||||||||    
T  36214149 agctgaaaattctcaatcttagtcattctcattatctgacaaagactccagatttttcaaacatgcctaaccttgaaaaactagtactcacagattgtcc 36214050  T
Q  200 aaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||  |||||||| ||||||| ||||||||||||||||| ||| ||||| | |||||||    
T  36214049 aagattgtctgaggtttcccacagtattggacatctcaataaagttcttctaataaatt 36213991  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 258
Target Start/End: Original strand, 18935147 - 18935305
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtcc 199  Q
    |||||||  |||| |||||||||||||||||  | |||| ||| || ||  |||||||| ||||||| |||||||||||| || |||| |||||||| ||    
T  18935147 agctgaagtttcttaatcttagtcattctcataacctgagacaaaccccgaacttttcaaacttgccgaatcttgaaaagttaatactcaaagattgccc 18935246  T
Q  200 aaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||  ||||   | |||| || ||||| |||| |||||||||||||||||| |||||||    
T  18935247 aagtttgtcctcggtttctcatagtataggacttctcaagaaaattcttttaataaatt 18935305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 34724906 - 34724805
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtcc 199  Q
    |||||||| |||| |||||||||||||||||  |  ||| ||| || || ||||||||||||||||| |||||||||||| || |||| |||||||||||    
T  34724906 agctgaaatttcttaatcttagtcattctcataacttgaaacaaacaccagacttttcatacttgccaaatcttgaaaagttaatactcaaagattgtcc 34724807  T
Q  200 aa 201  Q
    ||    
T  34724806 aa 34724805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 258
Target Start/End: Original strand, 8877344 - 8877528
Alignment:
Q  74 atttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatctt 173  Q
    ||||||||| || ||| |||||||| |||| ||||||||||||||||| || |||||  |||||||||| || || ||||||| | ||||||||||||||    
T  8877344 atttatgttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctgacacaaactccagactttttaaacttgcctaatctt 8877443  T
Q  174 gaaaagctagtacttaaagattgtccaaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||||||||||||| ||||||||||| ||| ||   |||||||| || | ||| |||| ||| || ||| |||||||||||||||    
T  8877444 gaaaagctagtactcaaagattgtccgaggttgatagagatttcgcatactataggacttctgaataaagttcttttgataaatt 8877528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 9250 - 9119
Alignment:
Q  70 taatatttatgttatttcaggggatggagcagctgaaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaa 169  Q
    ||||||||||| | || ||| || ||| | ||||||||||||||||||||||||||||||| ||| |||  || || || ||||||||||| ||||||||    
T  9250 taatatttatggtcttgcagaggctggcgaagctgaaaattctcaatcttagtcattctcattatttgatgcataccccagacttttcatatttgcctaa 9151  T
Q  170 tcttgaaaagctagtacttaaagattgtccaa 201  Q
    |||||||||||||||||| |||||||||||||    
T  9150 tcttgaaaagctagtactcaaagattgtccaa 9119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 47987172 - 47987014
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcct-gacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtc 198  Q
    |||| |||||||||||||||||||||||||| ||||| |||| || |||| ||||||||| || |||||||||| |||||||||||||| |||||||| |    
T  47987172 agctaaaaattctcaatcttagtcattctcattatctcacac-gaagccttgacttttcaaacatgcctaatctcgaaaagctagtactcaaagattgcc 47987074  T
Q  199 caaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||| | | ||||||||||| |  || |||||||||||| | ||||||||| |||||||||    
T  47987073 caatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatt 47987014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 47996459 - 47996301
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcct-gacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtc 198  Q
    |||| |||||||||||||||||||||||||| ||||| |||| || |||| ||||||||| || |||||||||| |||||||||||||| |||||||| |    
T  47996459 agctaaaaattctcaatcttagtcattctcattatctcacac-gaagccttgacttttcaaacatgcctaatctcgaaaagctagtactcaaagattgcc 47996361  T
Q  199 caaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||| | | ||||||||||| |  || |||||||||||| | ||||||||| |||||||||    
T  47996360 caatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatt 47996301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 48005746 - 48005588
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcct-gacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtc 198  Q
    |||| |||||||||||||||||||||||||| ||||| |||| || |||| ||||||||| || |||||||||| |||||||||||||| |||||||| |    
T  48005746 agctaaaaattctcaatcttagtcattctcattatctcacac-gaagccttgacttttcaaacatgcctaatctcgaaaagctagtactcaaagattgcc 48005648  T
Q  199 caaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||| | | ||||||||||| |  || |||||||||||| | ||||||||| |||||||||    
T  48005647 caatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatt 48005588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 48015031 - 48014873
Alignment:
Q  100 agctgaaaattctcaatcttagtcattctcaatatctgacacagacgcct-gacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtc 198  Q
    |||| |||||||||||||||||||||||||| ||||| |||| || |||| ||||||||| || |||||||||| |||||||||||||| |||||||| |    
T  48015031 agctaaaaattctcaatcttagtcattctcattatctcacac-gaagccttgacttttcaaacatgcctaatctcgaaaagctagtactcaaagattgcc 48014933  T
Q  199 caaggctgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    ||| | | ||||||||||| |  || |||||||||||| | ||||||||| |||||||||    
T  48014932 caatgttatctgagatttctcctagcattggacatctcgacaaaattcttctgataaatt 48014873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 8600 - 8503
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||| ||||| |||||||||| | || ||||  | || || |||||| |||||||||| |||||||||||||||||||| ||| ||||||||||    
T  8600 aaaattcttaatctaagtcattctccagatttgactgaaaccccagactttacatacttgccaaatcttgaaaagctagtactcaaaaattgtccaag 8503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 258
Target Start/End: Original strand, 9456 - 9609
Alignment:
Q  105 aaaattctcaatcttagtcattctcaatatctgacacagacgcctgacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaaggc 204  Q
    |||||||| |||||||||||||||||  || ||||  | || || ||||| |||||  |||| |||||||||||||||||||| ||||| ||||||||      
T  9456 aaaattcttaatcttagtcattctcaggatttgactgaaactccagacttctcatatatgccgaatcttgaaaagctagtactcaaagactgtccaagtt 9555  T
Q  205 tgtctgagatttcccaaagtattggacatctcaagaaaattcttttgataaatt 258  Q
    |||||| | | ||||| || ||||||  |||| | ||| ||||| |||||||||    
T  9556 tgtctgcggtctcccatagcattggatctctccataaacttcttctgataaatt 9609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 5096 - 5044
Alignment:
Q  150 gacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||||| | ||||||||||||||||||||||||| ||||| ||||||||    
T  5096 gacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 5044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 6470 - 6522
Alignment:
Q  150 gacttttcatacttgcctaatcttgaaaagctagtacttaaagattgtccaag 202  Q
    |||||||||| | ||||||||||||||||||||||||| ||||| ||||||||    
T  6470 gacttttcattcatgcctaatcttgaaaagctagtactcaaagactgtccaag 6522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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