View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7701_low_17 (Length: 243)
Name: NF7701_low_17
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7701_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 7440069 - 7440295
Alignment:
| Q |
17 |
gatgagagcgataaataaaaaggtagatgactttctctgcctaaaggtagagaatcctaatccattattttagcatgaataccagcagtaatcatgaaac |
116 |
Q |
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| T |
7440069 |
gatgagagcgataaataaaaaggtagatgactttctctgcctaaaggtagagaatcctaatccattattttagcatgaataccagcagtaatcatgaaac |
7440168 |
T |
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| Q |
117 |
aatgcaatatgttaaaagcaaaacacaacatgaaaacattagaatgctgtagcaaaataagcagaaccagtagaattccacccaaaaacaaagtagaacc |
216 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7440169 |
aatgcaatatgtaaaaagcaaaacacaacatgaaaacattagaatgctgtagcaaaataagcagaaccagtagaattccacccaaaaacaaagtagaacc |
7440268 |
T |
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| Q |
217 |
aagttgaacaggataggctaatgaatc |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
7440269 |
aagttgaacaggataggctaatgaatc |
7440295 |
T |
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