View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7701_low_19 (Length: 225)
Name: NF7701_low_19
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7701_low_19 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 37829 - 37896
Alignment:
| Q |
1 |
cagacgaaaatatgtcaattcaccaacaagattcatttcaaactcagattgcacttgtcggacaaaat |
68 |
Q |
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| T |
37829 |
cagacgaaaatatgtcaattcaccaacaagattcatttcaaactcagactgcacttgtcggacaaaat |
37896 |
T |
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Target: scaffold0018; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 37922 - 37985
Alignment:
| Q |
68 |
tccataaacat-gtcatcaatagaaattagagttaccatgatcgttcctccatcaatattcttc |
130 |
Q |
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| T |
37922 |
tccataaacatcgtcatcaatggaaattagagttaccatgatctttcctccatcaacattcttc |
37985 |
T |
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