View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7701_low_2 (Length: 460)
Name: NF7701_low_2
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7701_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Original strand, 13890967 - 13891411
Alignment:
| Q |
16 |
tttctgatgatgatggtgattgggagaaagaatgggggaatgtgggtgatgctggtgtgagaaatgaaggttttgagaaggtgaatcaaacagtggaaac |
115 |
Q |
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| T |
13890967 |
tttctgatgatgatggtgattgggagaaagaatgggggaatgtgggtgatgctggtgtgagaaatgaaggttttgagaaggtgaatcaaacagtggaaac |
13891066 |
T |
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| Q |
116 |
agcgcaaggaaacgataaacgaaagatgagggttaagactgtggcaaggaagagtgttgtgaacagaatgacaagatttgattttggtaatgatttgggt |
215 |
Q |
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| T |
13891067 |
agcgcaaggaaacgataaacgaaagatgagggttaagactgtggcaaggaagagtgttgtgaacagaataacaagatttgattttggtaatgatttgggt |
13891166 |
T |
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| Q |
216 |
ttggatggaaaggattgtgaattggagtttactgaaggtgctgatgatgtctttgttggggtgaggtttaatggatgatgatagaaatgttgaatgaaag |
315 |
Q |
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| T |
13891167 |
ttggatggaaaggattgtgaattggagtttactgaaggtgctgatgatgtctttgttggggtgaggtttaatggatgatgatagaaatgttgaatgaaag |
13891266 |
T |
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| Q |
316 |
tttttgttgttctttggttaatgatataggcaagaagtgtgtagtgttgttgttagaaaatgttttgcatagatagattttgggaggnnnnnnntgactg |
415 |
Q |
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| T |
13891267 |
tttttgttgttctttggttaatgatataggcaagaagtgtgtagtgttgttgttagaaaatgttttgcatagatagattttgggaggaaaaaaatgactg |
13891366 |
T |
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| Q |
416 |
taatggaggttgatagtatagtttttgaattgatgatgtccatct |
460 |
Q |
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| T |
13891367 |
tgatggaggttgatagtatagtttttgaattgattatgtgcatct |
13891411 |
T |
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