View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7701_low_20 (Length: 204)

Name: NF7701_low_20
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7701_low_20
NF7701_low_20
[»] scaffold0257 (1 HSPs)
scaffold0257 (19-204)||(17236-17421)
[»] chr3 (30 HSPs)
chr3 (19-204)||(28482022-28482207)
chr3 (19-203)||(28183650-28183834)
chr3 (19-204)||(28147449-28147634)
chr3 (19-204)||(28002085-28002270)
chr3 (19-204)||(28053382-28053567)
chr3 (19-204)||(28063807-28063992)
chr3 (19-204)||(28510834-28511019)
chr3 (23-203)||(27975239-27975419)
chr3 (19-203)||(27918258-27918442)
chr3 (19-203)||(28131833-28132017)
chr3 (18-203)||(17746357-17746542)
chr3 (18-203)||(19047677-19047862)
chr3 (19-203)||(28081629-28081813)
chr3 (23-201)||(27461229-27461407)
chr3 (82-202)||(27347393-27347513)
chr3 (82-200)||(12145970-12146088)
chr3 (82-203)||(11418680-11418801)
chr3 (82-203)||(18026654-18026775)
chr3 (153-204)||(28481854-28481905)
chr3 (82-203)||(27376153-27376274)
chr3 (82-203)||(27392396-27392517)
chr3 (144-203)||(28147742-28147801)
chr3 (82-199)||(26180779-26180896)
chr3 (82-199)||(26210270-26210387)
chr3 (82-199)||(26237514-26237631)
chr3 (144-203)||(28481687-28481746)
chr3 (80-199)||(26142474-26142593)
chr3 (155-198)||(26115163-26115206)
chr3 (80-199)||(26131742-26131861)
chr3 (167-203)||(27457157-27457193)
[»] chr7 (1 HSPs)
chr7 (19-203)||(8693523-8693707)
[»] chr2 (2 HSPs)
chr2 (82-203)||(22391075-22391196)
chr2 (25-132)||(8019663-8019772)
[»] scaffold0043 (1 HSPs)
scaffold0043 (82-203)||(54911-55032)


Alignment Details
Target: scaffold0257 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 17236 - 17421
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17236 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacagaattaaaaatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 17335  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 204  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17336 ataaggtgtctaccacagttgtattatatgacaattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 17421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 28482207 - 28482022
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    |||||||||||||||||| ||||| |||| ||| ||||| ||||| || ||||| |||| || |||||||||||||||||||||||||||||||||||||    
T  28482207 cctttttgtgggtcccaaaaattcatttttcctccaaaaccttacccatttaaagatcatgcgatgtgaaaaattgaaaattgttttctccacttctgta 28482108  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 204  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28482107 ataaggtgtctaccacagttgtattatatgagaattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 28482022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 28183650 - 28183834
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||  | |||| ||||||  ||||||||| ||||||||||||||| |||||||||||    
T  28183650 cctttttgtgggtcccaacaattcgttctccctccaaaaccttacaagaataaaaatcaagggatgtgaaaagttgaaaattgttttcaccacttctgta 28183749  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 203  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28183750 ataaggtgtctaccacagttgtattatatgagaattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 28183834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 28147449 - 28147634
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||  | |||| ||||||  ||||||||| ||||||||||||||| |||||||||||    
T  28147449 cctttttgtgggtcccaacaattcgttctccctccaaaaccttacaagaataaaaatcaagggatgtgaaaagttgaaaattgttttcaccacttctgta 28147548  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 204  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28147549 ataaggtgtctaccacagttgtattatatgagaattgaagagtgcaatgagttgaagcatattattgaagatgatttggagaatac 28147634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 28002085 - 28002270
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    ||||||| |||||||||| |||||||||||||| ||||| |||||||| || || || |   ||||||||||||||||||||||||||||||||||| ||    
T  28002085 cctttttatgggtcccaaaaattcgttttccctccaaaaccttacacacttgaaaattataaaatgtgaaaaattgaaaattgttttctccacttctata 28002184  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 204  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28002185 ataaggtgtctaccacagttgaattatatgagaattgaagagtgcaatgagttgaagcatattattgaagatgatttggagaatac 28002270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 28053382 - 28053567
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    |||||||||||||||||||| |||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||| ||    
T  28053382 cctttttgtgggtcccaacagttcgttttcccttcaaaaccttacagaattacaaatcaagcaatgtgaaaaattgaaaattgtattctccacttctata 28053481  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 204  Q
    ||||||| |||||||||||||  |  | |||| |||||||| ||||| ||||||||||||||  ||||||||||||||||||||||    
T  28053482 ataaggtatctaccacagttgcttactttgagaattgaagaatgcaacgagttgaagcatatttttgaagatgatttggagaatac 28053567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 28063807 - 28063992
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    |||||||||||||||||||| |||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||| ||    
T  28063807 cctttttgtgggtcccaacagttcgttttcccttcaaaaccttacagaattacaaatcaagcaatgtgaaaaattgaaaattgtattctccacttctata 28063906  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 204  Q
    ||||||| |||||||||||||  |  | |||| |||||||| ||||| ||||||||||||||  ||||||||||||||||||||||    
T  28063907 ataaggtatctaccacagttgcttactttgagaattgaagaatgcaacgagttgaagcatatttttgaagatgatttggagaatac 28063992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 28511019 - 28510834
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    |||||||||||||||||| ||||| |||| ||| ||||| ||||| || ||||| |||| || |||||||||||||||||||||||||||||||||| ||    
T  28511019 cctttttgtgggtcccaaaaattcatttttcctccaaaaccttacccatttaaagatcatgcgatgtgaaaaattgaaaattgttttctccacttctata 28510920  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 204  Q
    ||||||| ||| |||||||||| |  | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28510919 ataaggtatctgccacagttgtttactttgagaattgaagagtgcaatgagttgaagcatattattgaagatgatttggagaatac 28510834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 27975239 - 27975419
Alignment:
Q  23 tttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgtaataa 122  Q
    |||||||||||||| |||||||||| ||| ||||| || | | ||||||| |||| |||||||||||||||||||||||||||| |||||||| || ||     
T  27975239 tttgtgggtcccaaaaattcgtttttcctccaaaacctgatagaattaaaaatcatgcaatgtgaaaaattgaaaattgttttccccacttctatagtat 27975338  T
Q  123 ggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 203  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| |||||| |||||||||||||||    
T  27975339 ggtgtctaccacagttgtattctatgagaattgaagagtgcaaagagttgaagcatataattgaatatgatttggagaata 27975419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 27918258 - 27918442
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||  |||||| ||||||||||||||||||||||||||||||||| |||||||| |     
T  27918258 cctttttgtgggtcccaacaattcgttttccctccaaaaccttacagtattaaaaatcaagcaatgtgaaaaattgaaaattgttttccccacttctatt 27918357  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 203  Q
     |||| ||||| || ||||||  | |||| || |||||||| ||||| ||||||||| |||| ||||||||||||||||||||||    
T  27918358 ttaagatgtctgccgcagttgcttcatataagaattgaagaatgcaaagagttgaagtatattattgaagatgatttggagaata 27918442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 28131833 - 28132017
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    ||||||||||||||| || |||| ||||| ||| ||||| ||||| || ||||| |||| || |||||||||||||||||||||||||||||||||| ||    
T  28131833 cctttttgtgggtccaaaaaatttgtttttcctccaaaaccttacccatttaaagatcatgcgatgtgaaaaattgaaaattgttttctccacttctata 28131932  T
Q  119 ataaggtgtctaccacagttgtattat-atgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 203  Q
    ||||||| |||||||||||||  ||||  |||| |||||||| ||||| || ||||||||||| ||||||||||||||||||||||    
T  28131933 ataaggtatctaccacagttg-cttatcttgagaattgaagaatgcaaagaattgaagcatataattgaagatgatttggagaata 28132017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 17746542 - 17746357
Alignment:
Q  18 acctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgt 117  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||||  | ||||   |||||| |||||||||||||| |||||||||||| | |||| |    
T  17746542 acctttttgtgggtcccaaaaattcgttttccctccaaaaccttactgatttaacagtcaagcgatgtgaaaaattgataattgttttctctaattctat 17746443  T
Q  118 aataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 203  Q
    |||||||||||||||||| |||  | ||||||| |||||||| ||||| |||||||  |||||  |||||||||||||||||||||    
T  17746442 aataaggtgtctaccacaattgcgtcatatgagaattgaagaatgcaaagagttgacacatatttttgaagatgatttggagaata 17746357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 19047862 - 19047677
Alignment:
Q  18 acctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgt 117  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||||  | ||||   |||||| |||||||||||||| |||||||||||| | |||| |    
T  19047862 acctttttgtgggtcccaaaaattcgttttccctccaaaaccttactgatttaacagtcaagcgatgtgaaaaattgataattgttttctctaattctat 19047763  T
Q  118 aataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 203  Q
    |||||||||||||||||| |||  | ||||||| |||||||| ||||| |||||||  |||||  |||||||||||||||||||||    
T  19047762 aataaggtgtctaccacaattgcgtcatatgagaattgaagaatgcaaagagttgacacatatttttgaagatgatttggagaata 19047677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 28081629 - 28081813
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    ||||||||||||||| || | |||  ||||||| ||||| |||| | ||||||  |||| || ||||||||||||||||||| |||||||||||| | ||    
T  28081629 cctttttgtgggtcctaaaatttcaatttccctccaaaaccttaaagaattaagaatcatgcgatgtgaaaaattgaaaattattttctccacttgtata 28081728  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 203  Q
    ||||||||||| ||||||||| ||||||| ||  ||||||| ||||| ||||| |||||||| ||||||||||||||||||||||    
T  28081729 ataaggtgtctgccacagttgcattatataagagttgaagaatgcaaagagttaaagcatattattgaagatgatttggagaata 28081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 27461407 - 27461229
Alignment:
Q  23 tttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgtaataa 122  Q
    ||||||||||| || ||||| |||| ||| ||||| ||||||  |||||| |||| ||| |||||||||||||||| |||||||||||||||| || |||    
T  27461407 tttgtgggtccgaaaaattcatttttcctccaaaaccttacaagattaaaaatcatgcattgtgaaaaattgaaaactgttttctccacttctatagtaa 27461308  T
Q  123 ggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaa 201  Q
    |||||||||||||  ||  || |||||| |||||||| ||||| |||||||||||||| |||||| |||||||||||||    
T  27461307 ggtgtctaccacaactgctttttatgagaattgaagaatgcaaagagttgaagcatataattgaatatgatttggagaa 27461229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 27347393 - 27347513
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatc 181  Q
    ||||||||||||| |||||| |||||| |||||| |||||| ||||||||| ||||||  | |||| || |||||| | ||||| ||||||||||||||     
T  27347393 atgtgaaaaattggaaattgctttctctacttctataataatgtgtctaccgcagttgcttcatataagaattgaaaaatgcaaagagttgaagcatatg 27347492  T
Q  182 attgaagatgatttggagaat 202  Q
    |||||||||||||||||||||    
T  27347493 attgaagatgatttggagaat 27347513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 12145970 - 12146088
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatc 181  Q
    ||||||||||||| || |||||||||| |||||| |||||| ||| ||||| ||||||  | |||| || ||||| || ||||||||||||||||||||     
T  12145970 atgtgaaaaattggaatttgttttctctacttctataataatgtgcctaccgcagttgcttcatataagaattgatgaatgcaatgagttgaagcatatg 12146069  T
Q  182 attgaagatgatttggaga 200  Q
    |||||||||||||||||||    
T  12146070 attgaagatgatttggaga 12146088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 11418680 - 11418801
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatc 181  Q
    |||||||||||||||| |||||||||| |||||| |||||| ||| | ||| ||||||  | |||| || |||||||| ||||| ||||||||||||||     
T  11418680 atgtgaaaaattgaaatttgttttctctacttctataataatgtgccaaccgcagttgcttcatataagaattgaagaatgcaaagagttgaagcatatg 11418779  T
Q  182 attgaagatgatttggagaata 203  Q
    ||||||||||| ||||||||||    
T  11418780 attgaagatgacttggagaata 11418801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 18026775 - 18026654
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatc 181  Q
    ||||||||||||| | ||| ||||||| | |||| |||||| ||| ||||| |||||| || |||| || |||||||| ||||| ||||||||||||||     
T  18026775 atgtgaaaaattggagattattttctctatttctataataatgtgcctaccgcagttgcatcatataagaattgaagattgcaaagagttgaagcatatt 18026676  T
Q  182 attgaagatgatttggagaata 203  Q
    ||||||||||||||||||||||    
T  18026675 attgaagatgatttggagaata 18026654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 28481905 - 28481854
Alignment:
Q  153 ttgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28481905 ttgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaatac 28481854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 27376153 - 27376274
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatc 181  Q
    |||| |||| ||| || |||||||||| |||||| |||||| ||| ||||| ||||||  | |||| || ||||| || ||||| ||||||||||||||     
T  27376153 atgtaaaaatttggaatttgttttctctacttctataataatgtgcctaccgcagttgcttcatataagaattgatgaatgcaaggagttgaagcatatg 27376252  T
Q  182 attgaagatgatttggagaata 203  Q
    ||||||||||||||||||||||    
T  27376253 attgaagatgatttggagaata 27376274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 27392517 - 27392396
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatc 181  Q
    ||||||||||||| ||||||||||||| |||||| |||||| ||| ||||||||||||  | | || |  ||| | || ||||| |||||||||||| |     
T  27392517 atgtgaaaaattggaaattgttttctctacttctataataatgtgcctaccacagttgcttcacataataattaatgactgcaaagagttgaagcatttg 27392418  T
Q  182 attgaagatgatttggagaata 203  Q
    ||||||||||||||||||||||    
T  27392417 attgaagatgatttggagaata 27392396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 28147742 - 28147801
Alignment:
Q  144 atatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 203  Q
    ||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  28147742 atatgagaattgaagaatgcaatgagttgaggcatattattgaagatgatttggagaata 28147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 26180896 - 26180779
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtatt-gaagagtgcaatgagttgaagcatat 180  Q
    ||||||||||||| |||||||||||||||| |||||  |||| || |||||||| |||  ||| |  || | | ||||| ||||| ||||||||||||||    
T  26180896 atgtgaaaaattggaaattgttttctccacatctgttttaagatgcctaccacaattgg-ttagactagaagtagaagaatgcaaagagttgaagcatat 26180798  T
Q  181 cattgaagatgatttggag 199  Q
    |||||||||||||||||||    
T  26180797 cattgaagatgatttggag 26180779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 26210387 - 26210270
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatc 181  Q
    ||||||||||||| |||||||||||||||| |||||  |||| || |||||||| |||  | |  | |   | ||||| ||||| |||||||||||||||    
T  26210387 atgtgaaaaattggaaattgttttctccacatctgttttaagatgactaccacaattggttaaactaaaagtagaagaatgcaaagagttgaagcatatc 26210288  T
Q  182 attgaagatgatttggag 199  Q
    ||||||||||||||||||    
T  26210287 attgaagatgatttggag 26210270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 26237631 - 26237514
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatc 181  Q
    ||||||||||||| |||||||||||||||| |||||  |||| || |||||||| |||  | |  | |   | ||||| ||||| |||||||||||||||    
T  26237631 atgtgaaaaattggaaattgttttctccacatctgttttaagatgactaccacaattggttaaactaaaagtagaagaatgcaaagagttgaagcatatc 26237532  T
Q  182 attgaagatgatttggag 199  Q
    ||||||||||||||||||    
T  26237531 attgaagatgatttggag 26237514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 28481746 - 28481687
Alignment:
Q  144 atatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 203  Q
    ||||||| |||||||| ||||||||||||| |||||| |||||||||||| |||||||||    
T  28481746 atatgagaattgaagaatgcaatgagttgaggcatattattgaagatgatatggagaata 28481687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 26142593 - 26142474
Alignment:
Q  80 caatgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttg--tattatatgagtattgaagagtgcaatgagttgaagca 177  Q
    ||||||||||||||| |||||||||||||||| ||| |  |||| || |||||||| |||  || | ||  ||||  ||||| ||| | || ||||||||    
T  26142593 caatgtgaaaaattggaaattgttttctccacatctattttaagatggctaccacaattggttagtctacaagta--gaagaatgcgaagaattgaagca 26142496  T
Q  178 tatcattgaagatgatttggag 199  Q
    ||||||||||||||||||||||    
T  26142495 tatcattgaagatgatttggag 26142474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 26115206 - 26115163
Alignment:
Q  155 gaagagtgcaatgagttgaagcatatcattgaagatgatttgga 198  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||    
T  26115206 gaagaatgcaaagagttgaagcatatcattgaagacgatttgga 26115163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 26131861 - 26131742
Alignment:
Q  80 caatgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttg--tattatatgagtattgaagagtgcaatgagttgaagca 177  Q
    ||||||||||||||| |||||||||||||||| ||| |  |||| || |||||||| |||  || | ||   ||| |  ||| ||||| |||||||||||    
T  26131861 caatgtgaaaaattggaaattgttttctccacatctattttaagatgcctaccacaattggttagtctacatgtaat--agaatgcaaagagttgaagca 26131764  T
Q  178 tatcattgaagatgatttggag 199  Q
    | ||||||||||||||||||||    
T  26131763 tttcattgaagatgatttggag 26131742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 27457193 - 27457157
Alignment:
Q  167 gagttgaagcatatcattgaagatgatttggagaata 203  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  27457193 gagttgaagcatatcattgaatatgatttgaagaata 27457157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 8693707 - 8693523
Alignment:
Q  19 cctttttgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaaaattgaaaattgttttctccacttctgta 118  Q
    ||||||||||| |||||| |||| ||| ||||| ||||| |||||| | |||    |||||| ||||||||||||||||||||||||||| |||||| ||    
T  8693707 cctttttgtggctcccaaaaatttgttctccctccaaaaccttacatatttattagtcaagcgatgtgaaaaattgaaaattgttttctctacttctata 8693608  T
Q  119 ataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatcattgaagatgatttggagaata 203  Q
    |||||||||||||||||||||  ||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  8693607 ataaggtgtctaccacagttgctttatatgagaattgaagaatgcaaagagttgaagcatattattgaagatgatttggagaata 8693523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 22391075 - 22391196
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatc 181  Q
    ||||||||||||| || |||||||||| |||||| |||||||||||||||||||||||  | ||||||| |||||||| ||||| || |||||||||||     
T  22391075 atgtgaaaaattggaatttgttttctctacttctataataaggtgtctaccacagttgcttgatatgagaattgaagaatgcaaagaattgaagcatatt 22391174  T
Q  182 attgaagatgatttggagaata 203  Q
    ||||||||||||||||||||||    
T  22391175 attgaagatgatttggagaata 22391196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 8019663 - 8019772
Alignment:
Q  25 tgtgggtcccaacaattcgttttcccttcaaaatcttacacaattaaatatcaagcaatgtgaaa--aattgaaaattgttttctccacttctgtaataa 122  Q
    |||||||||||| |||||| ||||||| ||||| |||||| ||||||  |||| || ||  | ||  |||||||||||||||||||||||||| ||||||    
T  8019663 tgtgggtcccaaaaattcggtttccctccaaaaccttacagaattaacaatcatgcgatacgcaagaaattgaaaattgttttctccacttctataataa 8019762  T
Q  123 ggtgtctacc 132  Q
    | ||||||||    
T  8019763 gatgtctacc 8019772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 55032 - 54911
Alignment:
Q  82 atgtgaaaaattgaaaattgttttctccacttctgtaataaggtgtctaccacagttgtattatatgagtattgaagagtgcaatgagttgaagcatatc 181  Q
    ||||||||||||| ||||||||||||| |||||| | |||| ||||||||| ||||||  | |||| || |||||||| ||||| ||||||||||||||     
T  55032 atgtgaaaaattggaaattgttttctctacttctatgataatgtgtctacctcagttgcttcatataagaattgaagaatgcaaagagttgaagcatatg 54933  T
Q  182 attgaagatgatttggagaata 203  Q
    ||||||||||||||||||||||    
T  54932 attgaagatgatttggagaata 54911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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