View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7701_low_5 (Length: 304)
Name: NF7701_low_5
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7701_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 24137697 - 24137447
Alignment:
| Q |
13 |
gagagggagaaatttaaataacttcagtttttcaagttcagaaggcatgagaccaatatattgtcaaatgtaccaattccatttttattcacatcatgcg |
112 |
Q |
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| T |
24137697 |
gagagggagaaatttaaataacttcagttttttaagttcagaaagcatgagacccatatattgtcaaatgtaccaattccatttctattcacat---gcg |
24137601 |
T |
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| Q |
113 |
caatggccactgcgacttggctcttcgtgtcttcaatgccatgccttacaagaacttgtttgttttccttgaacttaatgctcattggctacgtcaaaaa |
212 |
Q |
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| T |
24137600 |
caatggccactgcgacttggctcttcgtgtcttcaatgccatgccttacaagaacttgtttgttttccttgaacttaatgctcattggctacgtcaaaaa |
24137501 |
T |
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| Q |
213 |
ccgcagactcatcgatgcccacaacttgtttgatttaatgcctcaaaaggatct |
266 |
Q |
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| T |
24137500 |
ccgcagactcatcgatgcccacaacttgtttgatttaatgcctcaaaaggatct |
24137447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 24137424 - 24137384
Alignment:
| Q |
264 |
tctggttatgttcagagaggttgcgttgacgaggctaaact |
304 |
Q |
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| T |
24137424 |
tctggttatgtttagagaggttgcgttgacgaggctaaact |
24137384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 45148207 - 45148450
Alignment:
| Q |
13 |
gagagggagaaatttaaataacttcagtttttcaagttcagaaggcatgagaccaatatattgtcaaatgtaccaattccatttttattcacatcatgcg |
112 |
Q |
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| T |
45148207 |
gagagggaaacatttacataacttctgttttcca-gttcaaaaagcaagagacacatacattgtgaaatgtaccaattccatttccactca---catgcg |
45148302 |
T |
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| Q |
113 |
caatggccactgcgacttggctcttcgtgtcttcaatgccatgccttacaagaacttgtttgttttccttgaacttaatgctcattggctacgtcaaaaa |
212 |
Q |
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||||||||||||| | || ||||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||||| |||||| |||||||| |
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| T |
45148303 |
caatggccactgccatttagctcttcgtgtcttcgactccatgccttacaagaac----ttgttttcctggaacttaatgctcactggctatgtcaaaaa |
45148398 |
T |
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| Q |
213 |
ccgcagactcatcgatgcccacaacttgtttgatttaatgcctcaaaaggat |
264 |
Q |
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| T |
45148399 |
tcgcagactcgttgatgcccgcaacttgtttgatttaatgcctcaaaaggat |
45148450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 45148475 - 45148515
Alignment:
| Q |
264 |
tctggttatgttcagagaggttgcgttgacgaggctaaact |
304 |
Q |
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||||||||||||| ||| ||||||||||| ||||||||||| |
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| T |
45148475 |
tctggttatgttcggagtggttgcgttgatgaggctaaact |
45148515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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