View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7701_low_6 (Length: 300)
Name: NF7701_low_6
Description: NF7701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7701_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 27094844 - 27094580
Alignment:
| Q |
16 |
cttctaccttgggagtctctctctctttttgtccttcaatcataaaaccttgccatgatatccacaaatattttcatcaaagcatggcccttttttcttc |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27094844 |
cttctaccttgggagtctctctcc--ttttgtccttcaatcataaaaccttgccatgatatccacaaatattttcatcaaagcatggcccttttttcttc |
27094747 |
T |
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| Q |
116 |
aaatttataagccaagtttctttcctatgactttatgtagtcttttcaatttctgaagagacttctcactctcttcaaacacactttgtctacaattatc |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27094746 |
aaatctataagccaagtttctttcctatgactttatgtagtcttttcattctctgaagagacttctcactctcttcaaacacactttgtctacaattatc |
27094647 |
T |
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| Q |
216 |
attccaagcaccagctatatacaaattaatcaaaccccttaagtcattaatcacattatatagtacg |
282 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27094646 |
acaccaagcaccagctatatacaaattaatcaaaccccttaagtcattaatcacattatatagtacg |
27094580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 27183459 - 27183723
Alignment:
| Q |
16 |
cttctaccttgggagtctctctctctttttgtccttcaatcataaaaccttgccatgatatccacaaatattttcatcaaagcatggcccttttttcttc |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27183459 |
cttctaccttgggagtctctctcc--ttttgtccttcaatcataaaaccttgccatgatatccacaaatattttcatcaaagcatggcccttttttcttc |
27183556 |
T |
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| Q |
116 |
aaatttataagccaagtttctttcctatgactttatgtagtcttttcaatttctgaagagacttctcactctcttcaaacacactttgtctacaattatc |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27183557 |
aaatctataagccaagtttctttcctatgactttatgtagtcttttcattctctgaagagacttctcactctcttcaaacacactttgtctacaattatc |
27183656 |
T |
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| Q |
216 |
attccaagcaccagctatatacaaattaatcaaaccccttaagtcattaatcacattatatagtacg |
282 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27183657 |
acaccaagcaccagctatatacaaattaatcaaaccccttaagtcattaatcacattatatagtacg |
27183723 |
T |
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