View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7702_high_2 (Length: 497)

Name: NF7702_high_2
Description: NF7702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7702_high_2
NF7702_high_2
[»] chr8 (3 HSPs)
chr8 (9-481)||(37925658-37926130)
chr8 (10-297)||(37922259-37922546)
chr8 (10-292)||(37937538-37937820)
[»] chr5 (1 HSPs)
chr5 (132-292)||(26285169-26285329)


Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 481
Target Start/End: Complemental strand, 37926130 - 37925658
Alignment:
Q  9 gcagagacattgacattggtgctggtgaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaac 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37926130 gcagagacattgacattggtgctggtaaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaac 37926031  T
Q  109 ttaacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaa 208  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37926030 ttaacgctgatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaa 37925931  T
Q  209 tcgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggttcttatttacctctcc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37925930 tcgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggttcttatttacctctcc 37925831  T
Q  309 ttttgacttgtttggccacatggaattttggttcaagtcaacttttattttgcctagacttggtagttactaaatggaattttggaccccctgtcccagc 408  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  37925830 ttttgacttgtttggccacatggaactttggttcaagtcaacttttattttgcctagacttggtagttactaaatggaattttggacccctagtcccagc 37925731  T
Q  409 tgtccatgggaacagttagttgttagtgtagaagttgtggggacgttaaatctaaactctttactgctgctgc 481  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37925730 tgtccatgggaacagttagttgttagtgtagaagttatggggacgttaaatctaaactctttactgctgctgc 37925658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 37922546 - 37922259
Alignment:
Q  10 cagagacattgacattggtgctggtgaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaact 109  Q
    |||||||| | |||||||| ||||| ||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||||| |||||| ||||||    
T  37922546 cagagacagtaacattggtactggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaact 37922447  T
Q  110 taacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaat 209  Q
     |||||| | ||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||| |||||||||    
T  37922446 caacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgccacacgacacaat 37922347  T
Q  210 cgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggttctta 297  Q
    ||||||||||| |||||||| |||||||||||||||||||| || || |||||||| ||  |||||||||||||||| ||||||||||    
T  37922346 cgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttctta 37922259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 37937820 - 37937538
Alignment:
Q  10 cagagacattgacattggtgctggtgaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaact 109  Q
    |||||||| | |||||||||||||||||||||||| |||||||| |  |||| ||||| |||||| | || |||||||||||||| || |||||||  ||    
T  37937820 cagagacagtaacattggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggtgctgctct 37937721  T
Q  110 taacgctaatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaat 209  Q
    ||||||| | || || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||| ||  |||||    
T  37937720 taacgctgaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccacccgttacaat 37937621  T
Q  210 cgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggt 292  Q
    ||| |||||||||||||||| |||||||||||||||||||| || || |||||||| |||||||| || ||||| ||||||||    
T  37937620 cgttcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatctacctttttacaggt 37937538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 132 - 292
Target Start/End: Original strand, 26285169 - 26285329
Alignment:
Q  132 ggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaatcgtgcacatgttattgctctag 231  Q
    ||||| || ||||| || |||||| |||||||||| |  ||||||||  | || || || || |||||||| || |||||||| |||||||||||||| |    
T  26285169 ggttcgcttactctctttcgatccattgttcaatcttcttgttacccaattgccgcgtatctcgccacgcgtcataatcgtgctcatgttattgctcttg 26285268  T
Q  232 gtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggt 292  Q
    |||||||||||||||||||||| ||||| || || ||| |||||||||| ||||| |||||    
T  26285269 gtgcttttctttgggctgctgctacttttcttgttgccttctcctccactttctttcaggt 26285329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University