View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7702_high_8 (Length: 282)
Name: NF7702_high_8
Description: NF7702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7702_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 44385996 - 44386278
Alignment:
| Q |
1 |
atttaggacataagaacactctttaacaacctttaaatagtttttatagaaattgaactattaaatactcgttagcacgaacctttaatttatttccatc |
100 |
Q |
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| T |
44385996 |
atttaggaaataagaatactctttaacaacctttaaatagtttttatagaaattgaactattaaatactagttagcacgaacatttaatttatttccatc |
44386095 |
T |
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| Q |
101 |
aaaaggagaaatggtcacaccttctaccagactcatcnnnnnnnnn-ccttgcttattctcaatttcaattaactttcattttcaatccctaacaaccac |
199 |
Q |
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| T |
44386096 |
acaaggagaaatagtcacaccttctaacacactcatcttatttttttccttgcttattctcaatttcaattaactttcattttcaatccctaacaaccac |
44386195 |
T |
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| Q |
200 |
tctcttctcaattggtgaaattgaaacatgaaaaaagagggaagttagtgaatctggtgatgatgagtgccggtgagaatgat |
282 |
Q |
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| T |
44386196 |
cctcttctcaattggtgaaattgaaacatgaaaaaagagagaagttagtggatctggtgatgatgagtgccggtgagaatgat |
44386278 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 32932040 - 32932096
Alignment:
| Q |
210 |
attggtgaaattgaaacatgaaa-aaagagggaagttagtgaatctggtgatgatga |
265 |
Q |
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| T |
32932040 |
attggtgaaattgaaacatgaaagaaagagggatggtggtgaatctggtgattatga |
32932096 |
T |
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