View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7702_high_9 (Length: 264)

Name: NF7702_high_9
Description: NF7702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7702_high_9
NF7702_high_9
[»] chr8 (1 HSPs)
chr8 (61-243)||(12641467-12641649)
[»] chr4 (5 HSPs)
chr4 (61-239)||(48958159-48958337)
chr4 (61-239)||(48961306-48961486)
chr4 (112-243)||(48974129-48974260)
chr4 (61-239)||(48965344-48965519)
chr4 (61-239)||(48912331-48912509)
[»] scaffold0536 (3 HSPs)
scaffold0536 (61-239)||(6497-6675)
scaffold0536 (70-240)||(10488-10658)
scaffold0536 (173-242)||(1551-1620)
[»] chr6 (2 HSPs)
chr6 (73-240)||(12590167-12590337)
chr6 (61-239)||(12483450-12483631)
[»] chr5 (1 HSPs)
chr5 (73-186)||(12540753-12540863)
[»] chr7 (1 HSPs)
chr7 (61-194)||(3417516-3417646)
[»] chr2 (2 HSPs)
chr2 (61-194)||(13440260-13440390)
chr2 (100-215)||(13448402-13448517)


Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 61 - 243
Target Start/End: Original strand, 12641467 - 12641649
Alignment:
Q  61 tggttgccaaaaggattcgaagagagaaacattggaaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttg 160  Q
    |||||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||    
T  12641467 tggttgcctaaaggattcgaagagagaaatgttgaaaataagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccacgctgctg 12641566  T
Q  161 tgggcgcattcatgacacattgtgggtggaactccaccgctgaggcggttagtgcagggattccgatgattacatggccagtg 243  Q
    |||| ||||||||||| ||||| |||| |||||||   |  ||||| ||||||||||||||||| ||||| || |||||||||    
T  12641567 tgggtgcattcatgacgcattgcgggtcgaactccttggtagaggctgttagtgcagggattccaatgatcacgtggccagtg 12641649  T

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Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 48958337 - 48958159
Alignment:
Q  61 tggttgccaaaaggattcgaagagagaaacattggaaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttg 160  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||| | ||||||| ||  |    
T  48958337 tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccg 48958238  T
Q  161 tgggcgcattcatgacacattgtgggtggaactccaccgctgaggcggttagtgcagggattccgatgattacatggcc 239  Q
    |||| ||||| ||||||||||| |||||||||||||| |  ||||| ||||| || ||| |||| ||||| || |||||    
T  48958237 tgggtgcatttatgacacattgcgggtggaactccactgtggaggctgttagcgcgggggttccaatgatcacgtggcc 48958159  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 48961486 - 48961306
Alignment:
Q  61 tggttgccaaaaggattcgaagagagaaacattggaaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttg 160  Q
    |||||||| |||||||| |||||||||||||||| ||| ||||| ||||| ||||||| |||||||||||||||||| |||||  |  ||||||| |  |    
T  48961486 tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgatcctgggccacacagcgg 48961387  T
Q  161 tgggcgcattcatgacacattgtgggtggaa--ctccaccgctgaggcggttagtgcagggattccgatgattacatggcc 239  Q
    |||| |  || ||||| ||||| ||||||||  |||||||  |||||| | |||||||||||| || ||||| ||||||||    
T  48961386 tgggtgtgtttatgacgcattgcgggtggaactctccaccattgaggctggtagtgcagggatcccaatgataacatggcc 48961306  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 243
Target Start/End: Complemental strand, 48974260 - 48974129
Alignment:
Q  112 atcattagggggtgggccccacaagtaatgattttaagccacactgttgtgggcgcattcatgacacattgtgggtggaactccaccgctgaggcggtta 211  Q
    ||||| ||||||||||||||||||||  |||||||| ||||| ||| | | || |||||| |||||||||| ||||||||||||||||  || || ||||    
T  48974260 atcataagggggtgggccccacaagtggtgattttaggccaccctgctatcggtgcattcttgacacattgcgggtggaactccaccgtggaagccgtta 48974161  T
Q  212 gtgcagggattccgatgattacatggccagtg 243  Q
    |||||||| |||| ||||| || |||||||||    
T  48974160 gtgcaggggttccaatgatcacgtggccagtg 48974129  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 48965519 - 48965344
Alignment:
Q  61 tggttgccaaaaggattcgaagagagaaacattggaaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttg 160  Q
    ||||| ||||| |||||||||||||||||||||||||| |||   ||||| || |||||||| ||||| || || ||  ||||| | |||||| | | ||    
T  48965519 tggttaccaaagggattcgaagagagaaacattggaaagaag---ggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctg 48965423  T
Q  161 tgggcgcattcatgacacattgtgggtggaactccaccgctgaggcggttagtgcagggattccgatgattacatggcc 239  Q
    |||| || || ||||| |||||||| ||||||||||| |  ||||| ||| |||| ||| |||||||||||||||||||    
T  48965422 tgggtgcctttatgactcattgtggttggaactccacagtggaggctgttggtgcgggggttccgatgattacatggcc 48965344  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 48912331 - 48912509
Alignment:
Q  61 tggttgccaaaaggattcgaagagagaaacattggaaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttg 160  Q
    ||||||||||| || || ||||||||||  || ||||| ||||| | | | || |||| ||| ||||| ||||| || |||||| | |||||||| |  |    
T  48912331 tggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatgattctgagccacacagccg 48912430  T
Q  161 tgggcgcattcatgacacattgtgggtggaactccaccgctgaggcggttagtgcagggattccgatgattacatggcc 239  Q
    |||| ||||| |||||||||||||||||||| ||||| | |||||| |||||||||||| |||| ||||| || |||||    
T  48912431 tgggtgcatttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggcc 48912509  T

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Target: scaffold0536 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 6497 - 6675
Alignment:
Q  61 tggttgccaaaaggattcgaagagagaaacattggaaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttg 160  Q
    ||||||||||| ||||||||||||||||| || ||||| ||||| ||||| || |||||||| ||||| |||||||| |||||||| |||||||  | |     
T  6497 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagctc 6596  T
Q  161 tgggcgcattcatgacacattgtgggtggaactccaccgctgaggcggttagtgcagggattccgatgattacatggcc 239  Q
    |||| || || ||||| |||||||||||||| ||||| | |||||| |||||||||||| |||||||||| || |||||    
T  6597 tgggtgcgtttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggcc 6675  T

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Target: scaffold0536; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 10488 - 10658
Alignment:
Q  70 aaaggattcgaagagagaaacattggaaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttgtgggcgcat 169  Q
    |||||||| ||||| |||   |||| ||| ||||| ||||| || |||| ||| |||||||| || || |||||| ||||||||||||||||||| || |    
T  10488 aaaggatttgaagaaagagttattgcaaagaagaagggtttgattattaagggttgggcccctcaggttatgattctaagccacactgttgtgggtgcgt 10587  T
Q  170 tcatgacacattgtgggtggaactccaccgctgaggcggttagtgcagggattccgatgattacatggcca 240  Q
    | |||||||||||||||||||| |||||||  |||||||||||||||||| |||| ||||| || ||||||    
T  10588 ttatgacacattgtgggtggaattccaccgtggaggcggttagtgcaggggttccaatgatcacgtggcca 10658  T

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Target: scaffold0536; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 1551 - 1620
Alignment:
Q  173 tgacacattgtgggtggaactccaccgctgaggcggttagtgcagggattccgatgattacatggccagt 242  Q
    |||||||||||||||||||||| |   | ||||| ||||||||||| ||||| ||||| |||||||||||    
T  1551 tgacacattgtgggtggaactctataaccgaggctgttagtgcaggaattccaatgatcacatggccagt 1620  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 12590167 - 12590337
Alignment:
Q  73 ggattcgaagagagaaacattgg---aaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttgtgggcgcat 169  Q
    ||||| |||||||||||||||||   ||| ||||| ||||| ||||||||||| ||||||||||||||||||||| | ||||||| ||  |||||||| |    
T  12590167 ggatttgaagagagaaacattgggagaaagaagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaatgcagtgggcgcgt 12590266  T
Q  170 tcatgacacattgtgggtggaactccaccgctgaggcggttagtgcagggattccgatgattacatggcca 240  Q
    | |||||||||||||| ||||| |||  ||  |||||||||||||| || ||||||||||| |||||||||    
T  12590267 ttatgacacattgtggatggaattccgtcgtggaggcggttagtgctggaattccgatgatcacatggcca 12590337  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 239
Target Start/End: Original strand, 12483450 - 12483631
Alignment:
Q  61 tggttgccaaaaggattcgaagagagaaacattggaa---ataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactg 157  Q
    |||||||| || ||||| || |||||||||||| |||   ||||||  ||||| ||||| ||||||||||| ||||| ||| ||||||| |||||| |||    
T  12483450 tggttgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctg 12483549  T
Q  158 ttgtgggcgcattcatgacacattgtgggtggaactccaccgctgaggcggttagtgcagggattccgatgattacatggcc 239  Q
      ||||| ||||| ||||| || ||||| ||||| ||    |  || |||||||||||||||||||| ||||| || |||||    
T  12483550 cagtgggtgcatttatgactcactgtggatggaattctgttgtggaagcggttagtgcagggattccaatgatcacgtggcc 12483631  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 12540863 - 12540753
Alignment:
Q  73 ggattcgaagagagaaacattggaaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttgtgggcgcattca 172  Q
    ||||| || ||||||||||||||||| |||   ||||| ||||||||||| ||||||||||| || | ||| || |||||| |||  ||||| | ||| |    
T  12540863 ggatttgaggagagaaacattggaaaaaag---ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggattta 12540767  T
Q  173 tgacacattgtggg 186  Q
    ||||||||||||||    
T  12540766 tgacacattgtggg 12540753  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 194
Target Start/End: Original strand, 3417516 - 3417646
Alignment:
Q  61 tggttgccaaaaggattcgaagagagaaacattggaaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttg 160  Q
    |||||||| || ||||| || |||||||||||||||   ||||| ||||| ||| ||||||| ||||||||||| ||   ||| || |||||| |||  |    
T  3417516 tggttgccgaagggatttgaggagagaaacattgga---aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcgg 3417612  T
Q  161 tgggcgcattcatgacacattgtgggtggaactc 194  Q
    | || | ||| ||||||||||||||| |||||||    
T  3417613 tagggggatttatgacacattgtggggggaactc 3417646  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 194
Target Start/End: Complemental strand, 13440390 - 13440260
Alignment:
Q  61 tggttgccaaaaggattcgaagagagaaacattggaaataagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttg 160  Q
    ||||||||||| |||||||||||||||||||||   |  | ||  ||||| ||||||| ||| |||||||||||||| | ||| || |||||| |||  |    
T  13440390 tggttgccaaagggattcgaagagagaaacatt---aggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcgg 13440294  T
Q  161 tgggcgcattcatgacacattgtgggtggaactc 194  Q
    |||| | ||| ||||| ||||| ||| |||||||    
T  13440293 tggggggatttatgacgcattgcggggggaactc 13440260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 13448517 - 13448402
Alignment:
Q  100 aagaaaggttttatcattagggggtgggccccacaagtaatgattttaagccacactgttgtgggcgcattcatgacacattgtgggtggaactccaccg 199  Q
    ||||| ||||| ||||||||||| ||||||||||| || | ||| || |||||| |||  ||||| | ||| ||||| ||||| ||| ||||||| ||||    
T  13448517 aagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccg 13448418  T
Q  200 ctgaggcggttagtgc 215  Q
      ||||| ||||||||    
T  13448417 tagaggctgttagtgc 13448402  T

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