View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7702_low_13 (Length: 248)
Name: NF7702_low_13
Description: NF7702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7702_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 945492 - 945279
Alignment:
| Q |
17 |
atgtatctcttaagtttagtgtataataatcaacttgttagaagtttgtttaaagtagacattaacattaactcaagcatatcaaatgaacaattagtgc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
945492 |
atgtatctcttaagtttagtgtataataatcaacttgtt-gaagtttgtttaaagtagacattaacattaactcaagcatatcaaatgaacaattagtgc |
945394 |
T |
|
| Q |
117 |
taggagttaatttgaataaacttctctctaaacacttaagaaaaatttgtataccatttccttattacttgattaaaaaataatcagaaaactaatgaga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
945393 |
taggagttaatttgaataaacttctctctaaacacttaagaaaaatttgtataccatttccttattacttgattaaaaaataatcagaaaactaatgaga |
945294 |
T |
|
| Q |
217 |
aaacaataatagaat |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
945293 |
aaacaataatagaat |
945279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 4098478 - 4098255
Alignment:
| Q |
17 |
atgtatctcttaagtttagtgtataataatcaacttgttagaagtttgtttaaa-------gtagacattaacattaactcaagcatatcaaatgaacaa |
109 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4098478 |
atgtatctcttaagattagtgtataacaatcaactagtt-gaagtttgtttaaactttaaagtagacgttaacattaactcaagcatatcaaatgaacaa |
4098380 |
T |
|
| Q |
110 |
ttagtgctaggagttaatttgaataaacttctctctaaacacttaagaaaaatttgtatacca-tttccttattac-ttgattaaaaa-ataatcagaaa |
206 |
Q |
| |
|
|||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | || ||| |
|
|
| T |
4098379 |
ttagtgatgggagttagtttgaataaacttctctctaaacacttaagaaaaatttgtataccattttccttattactttgattaaaaataaaaaataaaa |
4098280 |
T |
|
| Q |
207 |
actaatgagaaaacaataatagaat |
231 |
Q |
| |
|
|||||||| |||||| ||||||||| |
|
|
| T |
4098279 |
actaatgataaaacagtaatagaat |
4098255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University