View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7702_low_2 (Length: 621)
Name: NF7702_low_2
Description: NF7702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7702_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 21 - 611
Target Start/End: Complemental strand, 5403393 - 5402791
Alignment:
| Q |
21 |
agttaatcacatttttgtacacccctacttaggataggtacacat-------ccaatccatctaaaatatgactacttttagaggaataatttaggaaaa |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
5403393 |
agttaatcacatttttgcacacccctacttaggatatgtacacatttagtatccaatccatctaaaatatgactacttttggaagaataatttaggaaaa |
5403294 |
T |
|
| Q |
114 |
gccaaaactaataataatagagtagttacgt-----tgatataaaaatagtgttttggaaatatattggttatattttggactgagaattatgaataatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5403293 |
accaaaactaataataatagagtagttacgtaccgttgatataaaaatagtgttttggaaatatattggttatattttggactgagaattatgaataatt |
5403194 |
T |
|
| Q |
209 |
ttttctatattactcagatcaagcaagaagtgatgataaatatgtctatagatagaactaattgttgtgaaaagtatgagatccatattcttcttcaatt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5403193 |
ttttctatattactcagatcaagcaagaagtgatgataaatatgtctatagatagaactaattgttgtgaaaagtatgagatccatattcttcttcaatt |
5403094 |
T |
|
| Q |
309 |
tatagataaaaatgattacattgtattttatgtcaaatatgttttaaagcaatttttgaaactataaacagtgcacgaaatttgatcctaagtggtcaag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5403093 |
tatagataaaaatgattacattgtattttatgtcaaatttgttttaaagcaatttttgaaattataaacagtgcaccaaatttgatcctaagtggtcaag |
5402994 |
T |
|
| Q |
409 |
ttagggggcaacaatgtagatctcttccctttcactagagaatttgtatcaggaaaataaactccattactcaagtctttcacatacccttcttgtgtta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5402993 |
ttagggggcaacaatgtagatctcttccctttcactagagaatttgtatcaggaaaataaactccattactcaagtctttcacatacccttcttgtgtta |
5402894 |
T |
|
| Q |
509 |
tcctcattgggtaagtaacaaggtgcacaccttccatgtctacaatttcttcattgctgtagatttcccacatttgatctccaattgaacacattcttct |
608 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5402893 |
ccctcattggataagtaacaaggtgcacaccttccatgtctacaatttcttcattgctgtagatttcccacatttgatctccaattgaacacattctttt |
5402794 |
T |
|
| Q |
609 |
cac |
611 |
Q |
| |
|
||| |
|
|
| T |
5402793 |
cac |
5402791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 427 - 606
Target Start/End: Original strand, 43051135 - 43051317
Alignment:
| Q |
427 |
gatctcttccctttcactagagaatttgtatcaggaaaataaact---ccattactcaagtctttcacatacccttcttgtgttatcctcattgggtaag |
523 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||| | | |||||| | | |||| |||| | || | |||||||| |||| ||||||| |
|
|
| T |
43051135 |
gatcttttccctttcactagagcttttgtatcaggaaaatgatcctcaccattagttagatcttccacagatccattttgtgttactatcatagggtaag |
43051234 |
T |
|
| Q |
524 |
taacaaggtgcacaccttccatgtctacaatttcttcattgctgtagatttcccacatttgatctccaattgaacacattctt |
606 |
Q |
| |
|
| || ||||||||||| |||||||| |||||||||||| | || ||||||| |||||||| |||||| ||||| ||||||||| |
|
|
| T |
43051235 |
ttactaggtgcacaccctccatgtccacaatttcttcactactatagattttccacattttatctcctattgagcacattctt |
43051317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University