View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7702_low_5 (Length: 409)
Name: NF7702_low_5
Description: NF7702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7702_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 393
Target Start/End: Original strand, 31646593 - 31646975
Alignment:
| Q |
12 |
atgaaacttcaaagttaatcgggaattaacttagaaccaaataatatatagtttatgataaaaggtattttagcctatgtttataaataaaaaacactat |
111 |
Q |
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| T |
31646593 |
atgaaactttaaagttaatcgggaattaacttagaaccaaataatatatagtttatgacaaaaggtattttagcctatgtttataaataaaaaacactat |
31646692 |
T |
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| Q |
112 |
atagtacacnnnnnnnacatgat-attacattatttattattgatgtatttattacaaatttgaaataccagtcaaatgacaattcttttacattatact |
210 |
Q |
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| T |
31646693 |
atagtacactttttt-acatgattaatacattatttattattgatgtatttattacaaatttgaaataccagtcaaatgacaattattttacattatact |
31646791 |
T |
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| Q |
211 |
agattgattttttgtcttttgctaaattaaggtaatctttccacgaaactacatagacgtaattgtaatttgattaagaagttaatctctctca--atat |
308 |
Q |
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| T |
31646792 |
aaattgattttttgtcttttgctaaattaaggtaatctttccacgaaactacatagacgtaattgtaatttgattaagaagttaatctctctcaacatat |
31646891 |
T |
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| Q |
309 |
ggttgacacatgatgaacttttgacnnnnnnnttgcatagactgatgtataatttatttatggaattaatcgtctcgctcaaaat |
393 |
Q |
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| T |
31646892 |
ggttgacacatgatgaatttttgac-aaaaaattgcatagactgatgtataatttatttatggaattaatcgtctcacttaaaat |
31646975 |
T |
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