View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7702_low_6 (Length: 339)
Name: NF7702_low_6
Description: NF7702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7702_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 1892354 - 1892032
Alignment:
| Q |
1 |
attagttcaagacgaaccgttaaaggttctgttcaattttaccgaactattctaacagttcggttcaattttcctcgtagttacatgctatgatcactta |
100 |
Q |
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| T |
1892354 |
attagttcaagacgaaccattaaaggttctgttcaattttaccgaactattttaacagttcggttcaattttcctcgtagttacattcaatgatcactta |
1892255 |
T |
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| Q |
101 |
cattttctacatgtcaatgtagtatttaatgttcatgactctttcagtgtttcatatgtttccgaacttcaattcttaaagtataacgtctctcattttg |
200 |
Q |
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| T |
1892254 |
cattttctacatgtcagtgtagtatttaatgttcatgactctttcagtgtttcatatgtttccgaacttcaattcttaaagtataacgtctctcattttg |
1892155 |
T |
|
| Q |
201 |
cataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgcca |
300 |
Q |
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| T |
1892154 |
cataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgcccaacttgaatccactgcca |
1892055 |
T |
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| Q |
301 |
tgagaaagccagctggttgatga |
323 |
Q |
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| T |
1892054 |
tgagaaagccagctggttgatga |
1892032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 323
Target Start/End: Complemental strand, 1912994 - 1912854
Alignment:
| Q |
183 |
ataacgtctctcattttgcataatactaatcctacctgaaaaatgtagcgtagcgatagcagaaagaagtcaattgttagcagaatgccaccaatcgccc |
282 |
Q |
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| T |
1912994 |
ataacatctatcattttgcataatagtaaccctacctgtaaaatgtaccatagtgaaaccagaaaatagtcaattgtcagcagaataccagcaatggccc |
1912895 |
T |
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| Q |
283 |
aacttgaatccgctgccatgagaaagccagctggttgatga |
323 |
Q |
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| T |
1912894 |
aacttgaatccacagacttgagaaagtcaattggttgatga |
1912854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 1903035 - 1902962
Alignment:
| Q |
250 |
agtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatga |
323 |
Q |
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|||||| | |||| ||||||||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||| |
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| T |
1903035 |
agtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgagaaagccagctggttgatga |
1902962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 1907268 - 1907195
Alignment:
| Q |
250 |
agtcaattgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatga |
323 |
Q |
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| T |
1907268 |
agtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgagaaagccagctggttgatga |
1907195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 1879745 - 1879677
Alignment:
| Q |
255 |
attgttagcagaatgccaccaatcgcccaacttgaatccgctgccatgagaaagccagctggttgatga |
323 |
Q |
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|||||||| ||||||||| ||| ||||||||||||||| ||| | |||||||| || ||||||||||| |
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| T |
1879745 |
attgttagaagaatgccagcaaaagcccaacttgaatcctctgacttgagaaagtcaactggttgatga |
1879677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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